PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s954211g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 325aa    MW: 35772.9 Da    PI: 4.8717
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s954211g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.91.9e-32115171258
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                        dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers +dp+++++tYeg H h
  PDK_30s954211g001 115 DDGYRWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERSMDDPETLIVTYEGLHLH 171
                        8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-30107172IPR003657WRKY domain
PROSITE profilePS5081128.449109174IPR003657WRKY domain
SuperFamilySSF1182903.01E-27112172IPR003657WRKY domain
SMARTSM007748.0E-38114173IPR003657WRKY domain
PfamPF031063.4E-26115171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MELGDESEAN WLDSLGEELV RELFDDNIPL FVLPRVKEPE PDTSRESIIN KLISTVHSGA  60
KIGDTESAQS VTFQSGESDG HGGSRPIISL PEKGLGKMEN KYTLKIKTSG NGLADDGYRW  120
RKYGQKSIKN SPNPRSYYRC TNPRCNAKKQ VERSMDDPET LIVTYEGLHL HYTYSHFFLS  180
QMQDYSAADL HVSKKPKVQS MSMQNQVADC RFTESAAWSS LIMEQQQLQP GGGGGQSPQG  240
GLLEEAVQCP VGEDTLQQGF LDDLMQSPQG LLEDVVPLLV RKPSHSTSSS YDPRSSSPAS  300
SPSYSSLSWA PISSYLDVGV LSSII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-221131711674Probable WRKY transcription factor 4
2lex_A7e-221131711674Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937592.10.0probable WRKY transcription factor 49
TrEMBLA0A2H3X2G51e-169A0A2H3X2G5_PHODC; probable WRKY transcription factor 49
STRINGXP_008801895.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.14e-48WRKY DNA-binding protein 49