PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s953701g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | HB-other | ||||||||
Protein Properties | Length: 180aa MW: 19770.2 Da PI: 5.3763 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 36.6 | 7.7e-12 | 120 | 148 | 27 | 55 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRake 55 a+++ LAk+l+L rqV vWFqNrRa++ PDK_30s953701g001 120 AKQKLALAKQLNLRPRQVEVWFQNRRARH 148 467889*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0023 | 95 | 155 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.26E-10 | 105 | 152 | No hit | No description |
Pfam | PF00046 | 2.6E-9 | 120 | 148 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-11 | 120 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.548 | 121 | 151 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-10 | 121 | 154 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MELGLSLGEA PAKAFFAAEK AGVKGRGGLV LGFGMGLGVG LGGRREEEEE EEEEEREGGE 60 ERCSAEPPVQ LDLLPLAPVP RRSTPQLGFP WAPETRNWEV STRGFDVNQT PSAEVEEGAA 120 KQKLALAKQL NLRPRQVEVW FQNRRARHIH EHHFCDAFGS TKYVLSLGGS HLFDRPLGTA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026661053.1 | 2e-77 | homeobox-leucine zipper protein HOX11-like | ||||
TrEMBL | A0A3Q0I2F6 | 4e-76 | A0A3Q0I2F6_PHODC; homeobox-leucine zipper protein HOX11-like | ||||
STRING | XP_008791862.1 | 2e-76 | (Phoenix dactylifera) |