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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s951441g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | SBP | ||||||||
Protein Properties | Length: 401aa MW: 44021.1 Da PI: 7.5014 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.2 | 3.6e-41 | 92 | 168 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCevhsk+p+v+v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+ PDK_30s951441g001 92 CLVDGCKSDLSNCRDYHRRHKVCEVHSKTPMVMVGGQEQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKPQQ 168 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.7E-33 | 86 | 153 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.009 | 89 | 166 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.59E-39 | 90 | 171 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-30 | 92 | 165 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MDWDSKISPW DLPELEQHAE PNIGSVVGSS GSLGRSLTGG VECSVDLKLG GLGEFRPSDR 60 WKEQLPISSP VSSSRSSKRA RAPSGAVQNV SCLVDGCKSD LSNCRDYHRR HKVCEVHSKT 120 PMVMVGGQEQ RFCQQCSRFH LLVEFDEVKR SCRKRLDGHN RRRRKPQQES INSGSMLPNH 180 HGQDSMTRFS AYPQIFPTAT PETNWAGIVK SKEDALYAHY PLLHCMDRQQ QLGSFPRSFK 240 EGKQFSFMQD SDTAFSSRAT LEPSICRPLK TNSLAEGSSS SSKFFSDRLT QVLDSECALS 300 LLSSPTQTSG VNVGQMVPAD RIPMGQPLVS TIQYSDLGRY SGSQASNSVS PTGFSCSGID 360 DEHVATVLVS DANDAHLHCQ SIFHVGGEGP SSSQALPFSW Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-27 | 92 | 165 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 165 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008777032.1 | 0.0 | squamosa promoter-binding-like protein 18 | ||||
Swissprot | Q0J0K1 | 1e-85 | SPL18_ORYSJ; Squamosa promoter-binding-like protein 18 | ||||
TrEMBL | A0A2H3X1U5 | 0.0 | A0A2H3X1U5_PHODC; squamosa promoter-binding-like protein 18 | ||||
STRING | XP_008777032.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1755 | 37 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 6e-42 | SBP family protein |