PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s951441g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family SBP
Protein Properties Length: 401aa    MW: 44021.1 Da    PI: 7.5014
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s951441g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.6e-4192168278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        C v+gC++dls++++yhrrhkvCevhsk+p+v+v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+
  PDK_30s951441g001  92 CLVDGCKSDLSNCRDYHRRHKVCEVHSKTPMVMVGGQEQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKPQQ 168
                        **************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.7E-3386153IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.00989166IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.59E-3990171IPR004333Transcription factor, SBP-box
PfamPF031101.5E-3092165IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDWDSKISPW DLPELEQHAE PNIGSVVGSS GSLGRSLTGG VECSVDLKLG GLGEFRPSDR  60
WKEQLPISSP VSSSRSSKRA RAPSGAVQNV SCLVDGCKSD LSNCRDYHRR HKVCEVHSKT  120
PMVMVGGQEQ RFCQQCSRFH LLVEFDEVKR SCRKRLDGHN RRRRKPQQES INSGSMLPNH  180
HGQDSMTRFS AYPQIFPTAT PETNWAGIVK SKEDALYAHY PLLHCMDRQQ QLGSFPRSFK  240
EGKQFSFMQD SDTAFSSRAT LEPSICRPLK TNSLAEGSSS SSKFFSDRLT QVLDSECALS  300
LLSSPTQTSG VNVGQMVPAD RIPMGQPLVS TIQYSDLGRY SGSQASNSVS PTGFSCSGID  360
DEHVATVLVS DANDAHLHCQ SIFHVGGEGP SSSQALPFSW Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-27921651184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148165KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777032.10.0squamosa promoter-binding-like protein 18
SwissprotQ0J0K11e-85SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLA0A2H3X1U50.0A0A2H3X1U5_PHODC; squamosa promoter-binding-like protein 18
STRINGXP_008777032.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-42SBP family protein