PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s948721g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 312aa MW: 35059.9 Da PI: 8.4301 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.9 | 1.6e-56 | 5 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL++kv++ + + ++i++vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+ PDK_30s948721g002 5 LPPGFRFHPTDEELITYYLTRKVSDFGFAA-KAIADVDLNKCEPWDLPAKASMGEKEWYFFSLRDRKYPTGMRTNRATDAGYWKTTGKDKEI 95 79*************************999.88***************999999************************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g lvg+kktLvfykgrapkgekt+Wvmheyrl PDK_30s948721g002 96 FH-CGVLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 130 **.9******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.26E-64 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.125 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-29 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MEENLPPGFR FHPTDEELIT YYLTRKVSDF GFAAKAIADV DLNKCEPWDL PAKASMGEKE 60 WYFFSLRDRK YPTGMRTNRA TDAGYWKTTG KDKEIFHCGV LVGMKKTLVF YKGRAPKGEK 120 TNWVMHEYRL QTKFPYRTTK EEWVVCRVFK KSSNGKKTQP NTPPLPPLLE SPCNTTSLSE 180 LGELDVSILS NLVTNGPDGM QVNDSINKEV DMNMYMNWVL AREATSQPSL PWTSSLLGMG 240 YLPSPAILKA LPFNGCQPQE ATNLTSLSSF AAQANPLLGS ESKSSFPSSS AKAIEVPQQQ 300 QPFDQGPIWR GY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-59 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-59 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-59 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-59 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-58 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-58 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-58 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-58 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-58 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-58 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-58 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-58 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-59 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-59 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008797830.1 | 0.0 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLR3 | 6e-82 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A2H3YF56 | 0.0 | A0A2H3YF56_PHODC; NAC domain-containing protein 79 | ||||
STRING | XP_008797830.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7919 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 1e-102 | NAC domain containing protein 58 |
Publications ? help Back to Top | |||
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