PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 312aa MW: 35059.9 Da PI: 8.4301

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s948721g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.9	1.6e-56	5	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL++kv++ + + ++i++vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+ PDK_30s948721g002 5 LPPGFRFHPTDEELITYYLTRKVSDFGFAA-KAIADVDLNKCEPWDLPAKASMGEKEWYFFSLRDRKYPTGMRTNRATDAGYWKTTGKDKEI 95 79***********************999.88***********999999********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g lvg+kktLvfykgrapkgekt+Wvmheyrl PDK_30s948721g002 96 FH-CGVLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 130 .9******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.26E-64	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	60.125	5	151	IPR003441	NAC domain
Pfam	PF02365	6.0E-29	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEENLPPGFR FHPTDEELIT YYLTRKVSDF GFAAKAIADV DLNKCEPWDL PAKASMGEKE 60 WYFFSLRDRK YPTGMRTNRA TDAGYWKTTG KDKEIFHCGV LVGMKKTLVF YKGRAPKGEK 120 TNWVMHEYRL QTKFPYRTTK EEWVVCRVFK KSSNGKKTQP NTPPLPPLLE SPCNTTSLSE 180 LGELDVSILS NLVTNGPDGM QVNDSINKEV DMNMYMNWVL AREATSQPSL PWTSSLLGMG 240 YLPSPAILKA LPFNGCQPQE ATNLTSLSSF AAQANPLLGS ESKSSFPSSS AKAIEVPQQQ 300 QPFDQGPIWR GY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-59	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-59	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-59	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-59	4	157	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-58	4	157	19	174	NAC domain-containing protein 19
3swm_B	1e-58	4	157	19	174	NAC domain-containing protein 19
3swm_C	1e-58	4	157	19	174	NAC domain-containing protein 19
3swm_D	1e-58	4	157	19	174	NAC domain-containing protein 19
3swp_A	1e-58	4	157	19	174	NAC domain-containing protein 19
3swp_B	1e-58	4	157	19	174	NAC domain-containing protein 19
3swp_C	1e-58	4	157	19	174	NAC domain-containing protein 19
3swp_D	1e-58	4	157	19	174	NAC domain-containing protein 19
4dul_A	9e-59	4	157	16	171	NAC domain-containing protein 19
4dul_B	9e-59	4	157	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008797830.1	0.0	NAC domain-containing protein 79
Swissprot	Q9FLR3	6e-82	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A2H3YF56	0.0	A0A2H3YF56_PHODC; NAC domain-containing protein 79
STRING	XP_008797830.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7919	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-102	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]