PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NF-YC

Protein Properties

Length: 241aa MW: 26841.7 Da PI: 6.1439

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s947801g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	168.9	6.2e-53	79	182	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql++fw+ q ie+++dfknh+lPl+rikki+k+d dvkmisaeaP++++kace+fileltlrsw+h+eenkrrtl+k+d+aaa+++tdif PDK_30s947801g002 79 QLQAFWAMQmadIEETNDFKNHSLPLSRIKKIMKSDGDVKMISAEAPMIFAKACEMFILELTLRSWNHTEENKRRTLQKNDVAAAISQTDIF 170 89***9988889************************************************************************** PP NF-YC 90 dflvdivprdel 101 df+vd++pr+el PDK_30s947801g002 171 DFFVDVIPRNEL 182 *******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.84E-32	69	172	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.4E-36	92	165	IPR009072	Histone-fold
Pfam	PF00808	8.7E-20	101	164	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MVQSAQPSQP LMGLVTCTAQ TAYAAPYQSA AMVPGAPAVI GAISPGMQLT STFPTNPHQL 60 AYQQIQQLHQ QQQLQQHPQL QAFWAMQMAD IEETNDFKNH SLPLSRIKKI MKSDGDVKMI 120 SAEAPMIFAK ACEMFILELT LRSWNHTEEN KRRTLQKNDV AAAISQTDIF DFFVDVIPRN 180 ELKEEGSRIA SAALPVICAQ ADYHVPPQHQ VTGTEMILGK PTPVAYMWQQ PQQQQQVPDS 240 S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-54	87	179	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	157	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026656723.1	1e-164	nuclear transcription factor Y subunit C-4-like
Swissprot	Q655V5	2e-78	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A3Q0HPU2	1e-163	A0A3Q0HPU2_PHODC; nuclear transcription factor Y subunit C-4-like
STRING	XP_008776393.1	1e-164	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2703	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	4e-63	nuclear factor Y, subunit C2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]