PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

WOX

Protein Properties

Length: 281aa MW: 31681.4 Da PI: 5.6668

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s945591g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.8	2.5e-20	100	160	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e + +l +++e++V++WFqNrRa+ k+ PDK_30s945591g001 100 RQRWTPTPMQLQILESIFDQgNGTPSKQKIKEVTLELsqhgQISETNVYNWFQNRRARSKR 160 89***************99************************************97 PP
2	Wus_type_Homeobox	101.4	6.6e-33	99	162	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i+++t eL+++G+i+++NV++WFQNr+aR+++kq PDK_30s945591g001 99 ARQRWTPTPMQLQILESIFDQGNGTPSKQKIKEVTLELSQHGQISETNVYNWFQNRRARSKRKQ 162 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.4E-17	95	166	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.673	96	161	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.99E-18	98	164	IPR009057	Homeodomain-like
SMART	SM00389	3.1E-13	98	165	IPR001356	Homeobox domain
Pfam	PF00046	3.9E-18	100	160	IPR001356	Homeobox domain
CDD	cd00086	3.18E-13	100	162	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MEWEMACAAN NSDQSNRGEG EERRGGGEGM TDGVLYMKVM TDEQMEVLRR QISVYATICE 60 QLVEMHKAVT AQQDSLAGMR LGRLYCDPLM TPGGHKITAR QRWTPTPMQL QILESIFDQG 120 NGTPSKQKIK EVTLELSQHG QISETNVYNW FQNRRARSKR KQSAALPNNT DSEVEADDES 180 PSEKKPKSEK HTHESLPSRI DDISIHGTQM NPELRSIDLE TNPRQGMYAS NGISRSYGTL 240 GQMSFYENAL SNSRFDHLIG KMEIPRSFSP CQQGESYDLI G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	161	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008812362.1	0.0	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-109	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2H3ZE14	0.0	A0A2H3ZE14_PHODC; WUSCHEL-related homeobox 8-like
STRING	XP_008812362.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-63	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]