PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s945381g008

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

GRAS

Protein Properties

Length: 651aa MW: 73196.4 Da PI: 5.7485

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s945381g008	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	256.4	1e-78	351	598	56	305
GRAS 56 svselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgv 147 + +y++l +++ ++ l+a++lf ++P+ k+sh+ Nq+Il+ +e+++rvHi+Df+i +G+QWp++lq L+sRp+g+pslRiTg+ PDK_30s945381g008 351 CAQAIYNSLVAKRIC---AADILKAYHLFMAACPFKKISHFFSNQTILDVAEKATRVHIVDFGIYYGFQWPCFLQRLSSRPGGAPSLRITGI 439 455666666666665...8999******************************************************************** PP GRAS 148 gspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237 + p++g +e++eetg+rLa++++++g+pfe+++ +a ++e++++e+L+++++E+l+Vn+ ++l +l++e+v +s+r++vL+++++++P+ PDK_30s945381g008 440 DLPQPGfrPTERIEETGRRLADYCRSFGIPFEYHA-MAAKWETIRVEDLNIDKDEVLIVNCLYRLRNLMEETVVADSPRNKVLNTIRKMNPD 530 *9*************************.799************************************************* PP GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305 v+++ + ++++ F++rf eal ++salfd+le+++pre+ +r+ +Er l+gre+ nv++ceg er PDK_30s945381g008 531 VFIHGIVNGCYGAPFFVTRFREALFHFSALFDMLETNVPREDAQRQLIERDLFGREVLNVISCEGLER 598 ***************************************************************997 PP
2	GRAS	26.9	5.5e-09	595	646	323	374
GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 G++ +pl+ +++k+a+ ++ ++ + + v+e+sg+l++gWk+r ++++S W+ PDK_30s945381g008 595 GLERLPLKPDIVKKARDKVKACYHKDFVVDEDSGWLLQGWKGRIIYALSTWK 646 8999*****************889***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.114	240	651	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-76	351	598	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence Send to blast
MLDKNSFIDL PNYSLDPTLS ATPSVPTTDA TTSSSSAPSA EADSAEDAEI FSDIVLNYIS 60 EMLMEEDMDD KFEQFQEHPA LLAAEKPFYD ILAENFSPPP DQPPLHSNRS PESPDDGANN 120 HYGSSSSSNG VVGDSGSWLF DSLEHQHLQS HPVSFDYSSQ SSFSSANSVG NIVEAGSLPK 180 TAALPDFLTQ SQPAWEQFRR GVEEARRFLP GEHKLVIDLG ANGFSLPQEP KRENELVEVK 240 AEKEEREHPS QGSRGRKNPH SEDLELVEGR RSNKQSAVFP EQTVRTEMFD MILLSNEACT 300 RGRYELRAAM EKEAGKSPQS NQSRGSGGGR GRGKRQPKKE VVDLRTILVH CAQAIYNSLV 360 AKRICAADIL KAYHLFMAAC PFKKISHFFS NQTILDVAEK ATRVHIVDFG IYYGFQWPCF 420 LQRLSSRPGG APSLRITGID LPQPGFRPTE RIEETGRRLA DYCRSFGIPF EYHAMAAKWE 480 TIRVEDLNID KDEVLIVNCL YRLRNLMEET VVADSPRNKV LNTIRKMNPD VFIHGIVNGC 540 YGAPFFVTRF REALFHFSAL FDMLETNVPR EDAQRQLIER DLFGREVLNV ISCEGLERLP 600 LKPDIVKKAR DKVKACYHKD FVVDEDSGWL LQGWKGRIIY ALSTWKPNHA S

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence Send to blast

MLDKNSFIDL PNYSLDPTLS ATPSVPTTDA TTSSSSAPSA EADSAEDAEI FSDIVLNYIS  60
EMLMEEDMDD KFEQFQEHPA LLAAEKPFYD ILAENFSPPP DQPPLHSNRS PESPDDGANN  120
HYGSSSSSNG VVGDSGSWLF DSLEHQHLQS HPVSFDYSSQ SSFSSANSVG NIVEAGSLPK  180
TAALPDFLTQ SQPAWEQFRR GVEEARRFLP GEHKLVIDLG ANGFSLPQEP KRENELVEVK  240
AEKEEREHPS QGSRGRKNPH SEDLELVEGR RSNKQSAVFP EQTVRTEMFD MILLSNEACT  300
RGRYELRAAM EKEAGKSPQS NQSRGSGGGR GRGKRQPKKE VVDLRTILVH CAQAIYNSLV  360
AKRICAADIL KAYHLFMAAC PFKKISHFFS NQTILDVAEK ATRVHIVDFG IYYGFQWPCF  420
LQRLSSRPGG APSLRITGID LPQPGFRPTE RIEETGRRLA DYCRSFGIPF EYHAMAAKWE  480
TIRVEDLNID KDEVLIVNCL YRLRNLMEET VVADSPRNKV LNTIRKMNPD VFIHGIVNGC  540
YGAPFFVTRF REALFHFSAL FDMLETNVPR EDAQRQLIER DLFGREVLNV ISCEGLERLP  600
LKPDIVKKAR DKVKACYHKD FVVDEDSGWL LQGWKGRIIY ALSTWKPNHA S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-36	348	647	71	380	Protein SCARECROW
5b3h_A	3e-36	348	647	70	379	Protein SCARECROW
5b3h_D	3e-36	348	647	70	379	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008777105.1	0.0	scarecrow-like protein 9
Refseq	XP_008777111.1	0.0	scarecrow-like protein 9
TrEMBL	A0A2H3X212	0.0	A0A2H3X212_PHODC; scarecrow-like protein 9
STRING	XP_008777105.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-138	SCARECROW-like 14