PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s943701g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 301aa    MW: 34133.3 Da    PI: 4.632
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s943701g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.21.6e-4081141106
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeelv +yLkkkv+++k++l +vi+++d+y++ePwdL++  ++   e++ewyfFs++d+ky+tg+r+nrat +g+Wkatg+d
  PDK_30s943701g002   8 VPPGFRFHPTDEELVGYYLKKKVASQKIDL-DVIRDIDLYRIEPWDLQErcRIGYeEQSEWYFFSHKDRKYPTGTRTNRATLAGFWKATGRD 98 
                        69****************************.9***************953433332566********************************* PP

                NAM  90 kevlskkgelvglkktL 106
                        k+v++ k++l+g++ktL
  PDK_30s943701g002  99 KAVHD-KNKLIGMRKTL 114
                        *****.999*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-426126IPR003441NAC domain
PROSITE profilePS5100537.0078176IPR003441NAC domain
PfamPF023653.0E-199114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDSMESCVPP GFRFHPTDEE LVGYYLKKKV ASQKIDLDVI RDIDLYRIEP WDLQERCRIG  60
YEEQSEWYFF SHKDRKYPTG TRTNRATLAG FWKATGRDKA VHDKNKLIGM RKTLEEGWVV  120
CRAFKKRSAC PTRSAVDVWD SNFGYDEASR ASSSFADPIE YLQRQPESLL CKQETELDPL  180
NLLHSNQFLQ LPQLESPSLP LPKPPSLLSV AAENEDEEPT RGCNAIEKVT DWRALDKFVA  240
SQLSQEDGFS AERVVSDFGV DDDSDMALLL LQSGREEVGK LNGFLSSGGP DCDVGICVFE  300
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-34511412118Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3350471e-107KP335047.1 Musa AAB Group cultivar Rasthali vascular related NAC-domain protein 2 (VND2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026657744.10.0NAC domain-containing protein 37-like
SwissprotQ9SL411e-116NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A3Q0HTI00.0A0A3Q0HTI0_PHODC; NAC domain-containing protein 37-like
STRINGXP_008779904.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36253768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-101vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]