PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s942371g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 303aa MW: 33568.7 Da PI: 7.9419

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s942371g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.6	3.1e-10	129	177	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq PDK_30s942371g001 129 NSHSLAERVRREKISERMRLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 177 58************************....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.77E-11	124	181	No hit	No description
SuperFamily	SSF47459	9.81E-17	124	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.516	126	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	126	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-7	129	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-10	132	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGKVLLPVSV GPKSLKQAPE NVRMGCPALQ VIRYGLELPN FIEFSIIHIV PRILLPRDYF 60 CFLNLGVKLL RIPLNQEMNS SNADTRPSSF GNESFPEMAF KHAKEHPQDG DAPKEDYIHV 120 RAKRGQATNS HSLAERVRRE KISERMRLLQ DLVPGCSKIT GKAVMLDEII NYVQSLQRQV 180 EFLSMKLAAV SPELNSDNEQ SLLKDILHAQ DGGCAVLGFG PRMSSLRPRL YGPSTRGVMQ 240 TEIICSVPNS EDMLRAAPPH ISPVAQISSV WHDELQNVVR MGFVPDAPAG GGTEHNGSMK 300 VEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019710016.1	1e-125	transcription factor bHLH74 isoform X2
Refseq	XP_029123880.1	1e-125	transcription factor bHLH74 isoform X2
Swissprot	Q6NKN9	4e-55	BH074_ARATH; Transcription factor bHLH74
TrEMBL	A0A3Q0HXH4	1e-103	A0A3Q0HXH4_PHODC; transcription factor bHLH74-like
STRING	XP_008785728.1	1e-117	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6033	36	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	2e-57	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]