PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s940741g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 546aa    MW: 59401.4 Da    PI: 6.5806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s940741g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.6e-10368412554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h+  E  RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  PDK_30s940741g004 368 HSDLEASRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 412
                        89999********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.8E-273146IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.339363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-17367433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-7368412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-11368417No hitNo description
SuperFamilySSF474599.29E-16368434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-12369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MASGVSLLGW GDGYYKGCEE DKRKQRVTNP ASAEEQEHRK RVLRELNSLI SGGAGVSSPD  60
ETVEEEVTDT EWFFLVSMMQ SPSSPMLRPG SPVRTGWRWH PASERGRRLG LQTMACVPVG  120
SGVLELGSTD VIYQSSELMN TIRVLFNFTS LEIPSGCWLP TAAATPAVAD HGETDPSVLW  180
LADPTMVEIK DSISPASATA DISVTKPPIQ FDNPSSSTVT ENPSSIQMQR HHNQHQQQRQ  240
QHENQNSNSN SNLQTQSLFA AREFNFSEVV LNGPAPPQSF KPESGDILTF GDSKRNSSPA  300
PGSSLFSHHQ IATVPAADDK KNKRSTGATS RGSNDEGMLS FSSAAARPSS AGQAKSGGGI  360
LGGADSDHSD LEASRREKLN QRFYALRAVV PNVSKMDKAS LLGDAISYIN ELRSKLQSLE  420
SDKEGLQAQI DSLKRDRDSS PARPLQLPDQ DAKMMNGGRC HGVEIEVKIL GLEAMIRVQC  480
HKKNHPAARL MAALKDLDLD VYYASVSVVK DLMIQQTTVK MPSRVYSQEQ LSAALFSRVG  540
EPPSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-36714846194Transcription factor MYC3
4rqw_B4e-36714846194Transcription factor MYC3
4rs9_A4e-36714846194Transcription factor MYC3
4yz6_A4e-36714846194Transcription factor MYC3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796257.10.0transcription factor MYC2
SwissprotQ336P51e-174MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A2H3YBB90.0A0A2H3YBB9_PHODC; transcription factor MYC2
STRINGXP_008796257.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-106bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]