PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s940631g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family E2F/DP
Protein Properties Length: 533aa    MW: 60407.8 Da    PI: 9.8157
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s940631g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP77.51.3e-24196261171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        rk+ksL+ll++kf++l+ +++++ v+l+++ak+L    v  +rRRiYDi+NVLe+++++++k+kn+++w+g
  PDK_30s940631g002 196 RKQKSLGLLCSKFVSLYDRVDAESVSLDDAAKRL---GV--ERRRIYDIVNVLESVGVLARKAKNRYSWIG 261
                        79********************************...**..****************************98 PP
2E2F_TDP70.22.5e-22321405171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.........dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                        r+eksL+lltq+f+kl+ ++++++v+l+e+a+ L+ +         +   k+RR+YDi+NVL ++nl+ek     ++k+++rw g
  PDK_30s940631g002 321 RREKSLGLLTQNFVKLFLTTDADTVSLDEAARLLLGDgrnssqmrsNNAAKVRRLYDIANVLCSMNLLEKtqqldTRKPAFRWLG 405
                        689******************************************96668************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF017811.9E-30165IPR002675Ribosomal protein L38e
ProDomPD0103613.0E-27168IPR002675Ribosomal protein L38e
Gene3DG3DSA:1.10.10.107.0E-27192262IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.9E-16195260IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.2E-28196261IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-21197261IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.2E-22318406IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.6E-29321405IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.9E-18323405IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.26E-12323406IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005667Cellular Componenttranscription factor complex
GO:0005840Cellular Componentribosome
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
PKQIHEIKDF LLTARRKDAR SIKIKRSKDV VKFKVRCSKY LYTLCVFDSE KADKLKQSLP  60
PDTTIYTLFG YKVEERNERK ETREENRFSH HILSTNAMTT TMRSQCPRSV RIGGDSSLDW  120
VLCSEIFKML WLLEEKEQED DFPSSTLLGI RMQASHLQQE AEIFGPLVLQ RKKSRRMTSL  180
PPPYLESGCR HHTYSRKQKS LGLLCSKFVS LYDRVDAESV SLDDAAKRLG VERRRIYDIV  240
NVLESVGVLA RKAKNRYSWI GFSGIPKALF ELKKVLEDEE DDKLSDQTGD FGDYKLNPAA  300
VDAASSLCSA ACRARSVTDN RREKSLGLLT QNFVKLFLTT DADTVSLDEA ARLLLGDGRN  360
SSQMRSNNAA KVRRLYDIAN VLCSMNLLEK TQQLDTRKPA FRWLGTKGKP KADNDVTVTM  420
PPSTKQWNKR AFGTDITNAD YKRSKLNPPV DKKLSKACLR IDDLKECNLT AQKQLQNSQG  480
GYVFGPFQPD GASKGSGDVE EKGGNKVQDW ESLASSFRPQ YHNQGLLNNS SKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-361953973228Transcription factor E2F8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169175QRKKSRR
Functional Description ? help Back to Top
Source Description
UniProtInhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793781.10.0E2F transcription factor-like E2FE
SwissprotQ8LSZ46e-88E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLA0A2H3Y5N10.0A0A2H3Y5N1_PHODC; E2F transcription factor-like E2FE
STRINGXP_008793779.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.14e-74DP-E2F-like protein 3
Publications ? help Back to Top
  1. Chandran D, et al.
    Atypical E2F transcriptional repressor DEL1 acts at the intersection of plant growth and immunity by controlling the hormone salicylic acid.
    Cell Host Microbe, 2014. 15(4): p. 506-13
    [PMID:24721578]
  2. Wang Z, et al.
    Del1 Knockout Mice Developed More Severe Osteoarthritis Associated with Increased Susceptibility of Chondrocytes to Apoptosis.
    PLoS ONE, 2016. 11(8): p. e0160684
    [PMID:27505251]
  3. Heyman J,Polyn S,Eekhout T,De Veylder L
    Tissue-Specific Control of the Endocycle by the Anaphase Promoting Complex/Cyclosome Inhibitors UVI4 and DEL1.
    Plant Physiol., 2017. 175(1): p. 303-313
    [PMID:28698355]