PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s939691g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 102aa    MW: 11726.7 Da    PI: 7.1317
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s939691g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS82.95.3e-26373280350
               GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                         er+ vE++l+g+ei+n+++cegaerrerhe+lekW +rle aGF+ vpls++a+ qa++ll+ ++ +gy+
  PDK_30s939691g004   3 VERARVEKMLFGEEIKNIITCEGAERRERHEKLEKWVQRLELAGFGRVPLSYFATLQARRLLQSYGCEGYK 73 
                        5899*****************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.585177IPR005202Transcription factor GRAS
PfamPF035141.8E-23373IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MSVERARVEK MLFGEEIKNI ITCEGAERRE RHEKLEKWVQ RLELAGFGRV PLSYFATLQA  60
RRLLQSYGCE GYKGMPAISL GTLDCEDLIL IEGLWTYLGL CK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008776639.14e-44scarecrow-like protein 3
SwissprotQ9LPR82e-32SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2H3X0V59e-43A0A2H3X0V5_PHODC; scarecrow-like protein 3
STRINGXP_008776639.12e-43(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-35scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]