PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s939421g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 282aa    MW: 30970.4 Da    PI: 9.8607
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s939421g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-102444727
                       SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  7 rffartGtCkyGdrCkFaHgp 27
                       +++++tGtCk+G++CkF+H++
  PDK_30s939421g005 24 QYYLKTGTCKFGATCKFHHPK 44
                       59*****************96 PP
2zf-CCCH36.96.1e-126690327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       +++C +++rtG+Ck+G++CkF+H++
  PDK_30s939421g005 66 EKECAYYLRTGQCKFGNTCKFHHPQ 90
                       679********************97 PP
3zf-CCCH42.41.2e-13226251227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+f+++tG Ck+G+ CkF+H++
  PDK_30s939421g005 226 DQPECQFYMKTGDCKFGAACKFHHPK 251
                        689*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.4271745IPR000571Zinc finger, CCCH-type
SMARTSM003560.011844IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-52446IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-82444IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-42543IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-76291IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-56390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4226391IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-96690IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-46989IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.647224252IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5224251IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-11226251IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6227254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5230252IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGLQLPYKSK QKKEKGGERK KVVQYYLKTG TCKFGATCKF HHPKDKAGIF GRAPLNVLGY  60
PIRPNEKECA YYLRTGQCKF GNTCKFHHPQ PSNAMVSLRG SPVYPPVSPA SPGQQSYPGG  120
LTSWPLSSAS FIPSPRWQGP SSYAQLILPQ GLVQVPSWNA YPGHLGSVSS SESQQQTPGT  180
VQMYGSSRPS ETSMGVQGTI SSYRSSSTPM GQYALQRDSV FPERPDQPEC QFYMKTGDCK  240
FGAACKFHHP KERLVPAPNC VLSPLGLPLR PNYLVPLTFS CI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1720KSKQKKEKGGERKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026661839.11e-172zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF91e-126ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A3Q0I4T91e-171A0A3Q0I4T9_PHODC; zinc finger CCCH domain-containing protein ZFN-like isoform X2
STRINGXP_008794629.11e-171(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-90zinc finger protein 1