 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PDK_30s937291g001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
NAC |
| Protein Properties |
Length: 333aa MW: 38314.4 Da PI: 4.9196 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s937291g001 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 174.7 | 2.6e-54 | 8 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89
+ppGfrFhPtdeelv +yLkkkv+++k++l +vike+d+y++ePwdL++ ++ e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+d
PDK_30s937291g001 8 VPPGFRFHPTDEELVGYYLKKKVASQKIDL-DVIKEIDLYRIEPWDLQEwcQIGYeEQSEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRD 98
69****************************.9***************954433332566********************************* PP
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
k+v++ k++l+g++ktLvfykgrap+g+k+dW++heyrle
PDK_30s937291g001 99 KAVHD-KNKLIGMRKTLVFYKGRAPNGQKSDWIIHEYRLE 137
*****.999*****************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010200 | Biological Process | response to chitin |
| GO:0048759 | Biological Process | xylem vessel member cell differentiation |
| GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
| GO:1990110 | Biological Process | callus formation |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MDSMESCVPP GFRFHPTDEE LVGYYLKKKV ASQKIDLDVI KEIDLYRIEP WDLQEWCQIG 60
YEEQSEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKA VHDKNKLIGM RKTLVFYKGR 120
APNGQKSDWI IHEYRLESEE NGPPQEEGWV VCRAFKKRLA CPTRSVVDVW DSNYGYDEPS 180
RVISAMVNPI EYLQMQPKTL LCKQETERDR LNLLHSKQLF QLPQLESPPL PLVKQPSPLS 240
TAMENEDEEQ TRGCNSIEKV TDWRALDKFV ASQLSQEDRF SAQQVVSDFG VDSDPEDIAL 300
LLLQSGREEV GKMNGLLTSG GPECDIGICV FEK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
