PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s930251g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 288aa    MW: 32397.4 Da    PI: 5.8797
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s930251g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1054e-3397153258
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                        dDgy+WrKYGqK++k++++prsYYrCt ++C+vkk+vers+edp++++itYeg H h
  PDK_30s930251g004  97 DDGYRWRKYGQKSIKNNPNPRSYYRCTNPRCNVKKQVERSTEDPEMLIITYEGLHLH 153
                        8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.73691156IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-3193154IPR003657WRKY domain
SuperFamilySSF1182904.71E-2794154IPR003657WRKY domain
SMARTSM007741.2E-3796155IPR003657WRKY domain
PfamPF031061.6E-2697153IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEELVRELLD KESPLFVPPE EAPESKQVAC QKPVINNLVS SVYSGPTIGD IESALSMSYQ  60
HGPGGSEFVV SLPERESGKM KNKYTLRIKS CGNGLKDDGY RWRKYGQKSI KNNPNPRSYY  120
RCTNPRCNVK KQVERSTEDP EMLIITYEGL HLHYAYSNFF LHRSQGNSAA SLHAPKKPKV  180
LHQAEVLENP EVTPPEQEPS TTQQQQQLGI ACEESLQLRL LEDALQNPVV REESMQRELM  240
EDDVQCPQGL LEDIVPLPVR KPCNSTTFMH DPPSSSQPSS PSYSSSHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-23951531674Probable WRKY transcription factor 4
2lex_A2e-23951531674Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777211.30.0probable WRKY transcription factor 49
TrEMBLA0A2H3X2970.0A0A2H3X297_PHODC; probable WRKY transcription factor 49
STRINGXP_008777211.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.18e-43WRKY DNA-binding protein 49