PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s929081g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 253aa MW: 27862.8 Da PI: 10.8171

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s929081g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.4	4e-07	28	73	2	47
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 fY eY+++ GF+ r+ ++++s +g ++++f C + + +k + PDK_30s929081g004 28 FYYEYGEKSGFKARTGSNRRSAGSGALIMQRFLCWRGNYLMYRKFT 73 9*********************************998776666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-4	28	81	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MPVKTEDGAG LVPVMGMEFE SVEAAKAFYY EYGEKSGFKA RTGSNRRSAG SGALIMQRFL 60 CWRGNYLMYR KFTGTNAGKQ KRGPYKKRAR RLATAAAKKD GDVGEIIQVE SSTEKVGVAG 120 GDRGVEVHSG PPVKEQAVAE KDVGQKPPIP SIGMPAQAVA AAAGKDGEKQ KDDGKAIPVA 180 NTAESRLLRE LGVRVSRYTQ EERRDIIIRY MMKRTNRQGV QRPVKVSSRR ALAERRQRGI 240 GGRFLRRDES QET

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026659802.1	1e-173	uncharacterized protein LOC113462603 isoform X2
TrEMBL	A0A3Q0I2M5	1e-171	A0A3Q0I2M5_PHODC; uncharacterized protein LOC113462603 isoform X2
STRING	XP_008787331.1	1e-166	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14833	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	9e-10	FAR1 family protein