PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s929081g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | LBD | ||||||||
Protein Properties | Length: 188aa MW: 20500.7 Da PI: 9.0835 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 146.9 | 5.6e-46 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+Ca+dC++apyfpa++p+kfanvhk+FGasnv+kll++lp ++r+da+sslvyeA+ar+rdPvyG+vg i++lq+q+e l++ PDK_30s929081g002 13 PCAACKLLRRRCAQDCIFAPYFPADEPQKFANVHKVFGASNVSKLLQELPAHHRSDAVSSLVYEANARVRDPVYGCVGAISSLQRQIEALQT 104 7******************************************************************************************* PP DUF260 93 elallkee 100 +la +++e PDK_30s929081g002 105 QLAIAQAE 112 ***99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.918 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.0E-45 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MRELGRKQGT VSPCAACKLL RRRCAQDCIF APYFPADEPQ KFANVHKVFG ASNVSKLLQE 60 LPAHHRSDAV SSLVYEANAR VRDPVYGCVG AISSLQRQIE ALQTQLAIAQ AEMVHLRTRH 120 AAYLAHLSSR SPMVVGMTST GAGTASSSMS LPKQQLMKPD QHGPKPLFAL DMVMVDQTSL 180 GEPPIWSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-51 | 9 | 114 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-51 | 9 | 114 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008787332.1 | 1e-139 | LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 7e-65 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A2H3XQP2 | 1e-137 | A0A2H3XQP2_PHODC; LOB domain-containing protein 4 | ||||
STRING | XP_008787332.1 | 1e-138 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 6e-66 | LOB domain-containing protein 4 |