PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s925071g014 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 501aa MW: 55095.8 Da PI: 6.8425 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.5 | 3e-07 | 261 | 282 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 Cp+C+k F+r+ nL+ H+r H PDK_30s925071g014 261 FCPICKKGFKRSANLRMHMRGH 282 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.46E-6 | 258 | 284 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-6 | 259 | 311 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.157 | 260 | 287 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0014 | 260 | 282 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 262 | 282 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 57 | 309 | 342 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 20 | 347 | 369 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MDHMQIPTSE ASSSMSNQSE NINPNQLFTQ FGGKSLSYGA GSGQSFPKYS QNLDFSSIWP 60 YDSEQVVKTP DQVAPFANSQ MGEAVDWDPR AMLNNLIFID QKIHQVQDVI HSAIDIEGPF 120 SIQPTELAVK QQLVTTDLAY IISQLISTVG NLLPSINNTL LSNTPPVGKM GGTVGSTPSF 180 ALTGTLQQNK GFSSEKNVVM EHKDLTRSLT DSGNEGIKPV PVKHHDVKVH KDSLDGENLP 240 AGSYEILEPK KEDILAPHPH FCPICKKGFK RSANLRMHMR GHGDEYKTPA ALAKPSNEAS 300 SEPVLIKRYS CPIVGCKRNR EHEKFQPLKT ILCVKNHYKR SHCDKSYTCS RCNAKKFSVL 360 ADLKTHEKHC GCDRWLCSCG TSFSRKDKLL GHANLFPGHS PAISTGDVKD SGVTDQGRNI 420 ETITEIGSLG HNFPGNSVDD LDDDPCYFSP MNFGSFKYGG LGDSPQQALD ASESWFSPSE 480 PCNIVQNNGD NSNLDHLGKW R |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008784214.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q943I6 | 1e-152 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A2H3XID9 | 0.0 | A0A2H3XID9_PHODC; zinc finger protein STOP1 homolog | ||||
STRING | XP_008784214.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-130 | C2H2 family protein |
Publications ? help Back to Top | |||
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