PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s922391g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 316aa    MW: 35367.9 Da    PI: 8.2629
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s922391g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-161462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEd +l+ +++ +G+g +W + ++++g++R++k+c++rw++yl
  PDK_30s922391g001 14 KGPWSPEEDAKLKSYIEHHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                       79*********************************************97 PP
2Myb_DNA-binding36.61e-1169111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  PDK_30s922391g001  69 GGFSEEEDRIICSLYVAIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                        569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.523962IPR017930Myb domain
SuperFamilySSF466896.94E-2711109IPR009057Homeodomain-like
SMARTSM007172.0E-121364IPR001005SANT/Myb domain
PfamPF002491.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-251569IPR009057Homeodomain-like
CDDcd001671.27E-91662No hitNo description
PROSITE profilePS5129421.15263117IPR017930Myb domain
SMARTSM007174.5E-1167115IPR001005SANT/Myb domain
PfamPF002492.3E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2370117IPR009057Homeodomain-like
CDDcd001678.23E-871111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE HHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDRIIC SLYVAIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK  120
QPKNQQQARR VCHKNQETKE SKDGNSLWPT PPVPADQFDQ VDHHVSDGRA SIRKFLTTLG  180
GRFSCNYGAE HETPLASFLG QQHLYRSSMD SIEPSEQVNS FINGCSPSGY HHILQGRSEI  240
PVEFNEMFCG NSVKLEGLDC FFGVGNMVGE SNGTSTSGSM NWNEVSPLIY PPVVTSYQGM  300
QQQYLPDELV HLLGAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785764.10.0transcription repressor MYB5
TrEMBLA0A2H3XMB30.0A0A2H3XMB3_PHODC; transcription repressor MYB5
STRINGXP_008785764.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-76myb domain protein 84