PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NF-YA

Protein Properties

Length: 343aa MW: 37355.1 Da PI: 9.6672

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s919591g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.1	2.5e-32	189	245	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+++kl k rkpylheSRh hA++R+RgsgGrF PDK_30s919591g001 189 EEPIYVNAKQYRAILRRRQLRAKLEAQNKL-VKVRKPYLHESRHLHAMKRARGSGGRF 245 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.0E-36	187	248	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.858	188	248	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.0E-27	190	245	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.3E-23	191	213	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	193	213	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.3E-23	222	245	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MPLNNVKAYD RQPFSNKYSE SSLVRSASNC VDNCASWLNS SGSSFPQSSY FTNIYMNMDF 60 LAQHGNQIKQ LGGQIPDQDS SSTQSTGQSH QEVSGTSEGN LHEQRVSAQA DLVNYGGVKS 120 LVMVAIFYFS DMSFDTLCLA LVIVSELLKG TGFVLVLVRA LFNGFKIHPQ MMGMAPSSRV 180 PLPLEPAAEE PIYVNAKQYR AILRRRQLRA KLEAQNKLVK VRKPYLHESR HLHAMKRARG 240 SGGRFLNINQ LQQQQQQLQP SVTTGLENVS GSNLHSENGP VGSSATPTSS DVTSVSTSGG 300 MLLGQQDHLG FLSADFRSHV RGSSQGGGGM IGNGSQPRIT IMQ

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MPLNNVKAYD RQPFSNKYSE SSLVRSASNC VDNCASWLNS SGSSFPQSSY FTNIYMNMDF  60
LAQHGNQIKQ LGGQIPDQDS SSTQSTGQSH QEVSGTSEGN LHEQRVSAQA DLVNYGGVKS  120
LVMVAIFYFS DMSFDTLCLA LVIVSELLKG TGFVLVLVRA LFNGFKIHPQ MMGMAPSSRV  180
PLPLEPAAEE PIYVNAKQYR AILRRRQLRA KLEAQNKLVK VRKPYLHESR HLHAMKRARG  240
SGGRFLNINQ LQQQQQQLQP SVTTGLENVS GSNLHSENGP VGSSATPTSS DVTSVSTSGG  300
MLLGQQDHLG FLSADFRSHV RGSSQGGGGM IGNGSQPRIT IMQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-21	189	257	2	70	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010936981.1	1e-171	nuclear transcription factor Y subunit A-3 isoform X2
Swissprot	Q9LVJ7	2e-43	NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBL	A0A2H3XRW4	1e-132	A0A2H3XRW4_PHODC; nuclear transcription factor Y subunit A-6-like
STRING	XP_008798898.1	1e-166	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1373	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	6e-33	nuclear factor Y, subunit A6

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]