PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s910611g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 27986.3 Da PI: 7.2951 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.1 | 7.9e-12 | 14 | 59 | 7 | 55 |
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 r++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PDK_30s910611g001 14 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 59 8999********988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.529 | 8 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-27 | 14 | 73 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.07E-22 | 14 | 69 | No hit | No description |
Pfam | PF00847 | 1.0E-6 | 14 | 59 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-15 | 15 | 67 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-15 | 15 | 68 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MKTMSRQEYV AHLRRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGV 60 NAVTNFDITR YDVEKIMASS TLLSGELARR TKAIEAGIDA SSTQKSRREL DLAEENNSCG 120 SDWKMVLYQS PQHISQPSES LNHNPVASMD DYRSSTPLLA ALHGTAGMET VSSVEGLEDS 180 GKIGNKHISN SSSLVTSLGS SREGSPDRPG LSMLYSKPSP NFVRDAPMSS WIPSTQIRPT 240 ISLAQMPVFA AWNDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008785732.1 | 1e-180 | AP2-like ethylene-responsive transcription factor CRL5 | ||||
Swissprot | Q84Z02 | 4e-65 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A2H3XLU5 | 1e-179 | A0A2H3XLU5_PHODC; AP2-like ethylene-responsive transcription factor CRL5 | ||||
STRING | XP_008785732.1 | 1e-179 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 3e-45 | AP2 family protein |
Publications ? help Back to Top | |||
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