PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s909171g006

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bZIP

Protein Properties

Length: 519aa MW: 57464.8 Da PI: 8.5549

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s909171g006	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.2e-10	216	257	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka+i++Le +L++ ++L PDK_30s909171g006 216 AKSLRRLAQNREAARKSRLRKKAYIQQLESSRIKLTQLEQDL 257 5889*************************9777777666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	213	289	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.174	215	259	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.4E-8	216	258	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-7	217	260	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.9E-8	218	261	No hit	No description
PROSITE pattern	PS00036	0	220	235	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-31	297	372	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MGGAERRQRR AYQKALSCQS SSHPRGPKRE HDKNFIDFFN DGAGLRLLVS YHVLASLSTF 60 KMAGERKIEP TKGDQEGAAY FGELEEALMQ GVAGMRNDGD RKPFFTTRPP TLEIFPSWPM 120 RFQQTPKCQQ GNSQPAESTD SGSAQNTISQ PDSESPGSVK ASSEQSSEQQ QQRMMAGDAP 180 SAEAAAPNHQ PKTQDNVLFR RVAGSTAEKD GKILDAKSLR RLAQNREAAR KSRLRKKAYI 240 QQLESSRIKL TQLEQDLQRA RSQGLFLGGG GAGGNISSAA AVFDMEYGRW LDENYRHMTD 300 LREGLQAHLS DGDLRVIVDE CLAHYDEIFR VKGVAAKSDV LHLITGMWTT PAERCFLWMG 360 GFRPSELLKI LIPQMDPLTE QQLVGICSLQ QSSQQAEEAL SQGLEQLHQS LGDAVASGSL 420 SEGTDVGNYM GQIAIALGKL ADLEGFVRQA DNMRQQTLHQ TRRILTVRQA ARCFLAIGEY 480 NSRLRALSSL WASRPRDSTV FGAQLYPYFI KHGLMIAPI

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MGGAERRQRR AYQKALSCQS SSHPRGPKRE HDKNFIDFFN DGAGLRLLVS YHVLASLSTF  60
KMAGERKIEP TKGDQEGAAY FGELEEALMQ GVAGMRNDGD RKPFFTTRPP TLEIFPSWPM  120
RFQQTPKCQQ GNSQPAESTD SGSAQNTISQ PDSESPGSVK ASSEQSSEQQ QQRMMAGDAP  180
SAEAAAPNHQ PKTQDNVLFR RVAGSTAEKD GKILDAKSLR RLAQNREAAR KSRLRKKAYI  240
QQLESSRIKL TQLEQDLQRA RSQGLFLGGG GAGGNISSAA AVFDMEYGRW LDENYRHMTD  300
LREGLQAHLS DGDLRVIVDE CLAHYDEIFR VKGVAAKSDV LHLITGMWTT PAERCFLWMG  360
GFRPSELLKI LIPQMDPLTE QQLVGICSLQ QSSQQAEEAL SQGLEQLHQS LGDAVASGSL  420
SEGTDVGNYM GQIAIALGKL ADLEGFVRQA DNMRQQTLHQ TRRILTVRQA ARCFLAIGEY  480
NSRLRALSSL WASRPRDSTV FGAQLYPYFI KHGLMIAPI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026660150.1	0.0	transcription factor TGAL5-like isoform X3
Swissprot	Q5N7C7	1e-173	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A3Q0I386	0.0	A0A3Q0I386_PHODC; transcription factor TGAL5-like isoform X3
STRING	XP_008787868.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-127	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]