PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s906611g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 316aa MW: 34555.5 Da PI: 6.3083 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+ + G g+W+ +ar g+ R++k+c++rw +yl PDK_30s906611g001 25 KGLWSPEEDDKLISYMLSNGQGCWSDVARNAGLQRCGKSCRLRWINYL 72 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 78 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+e +++++ lG++ W+ Ia++++ gRt++++k++w++ PDK_30s906611g001 78 RGAFSPQEEEVIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 121 89********************.*********.***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.665 | 20 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-27 | 23 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-11 | 24 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 25 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 26 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.85E-9 | 28 | 72 | No hit | No description |
PROSITE profile | PS51294 | 24.935 | 73 | 127 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-14 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-14 | 78 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 80 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.55E-10 | 80 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MRKPDPPAKN NLSNNNSNGA TKLKKGLWSP EEDDKLISYM LSNGQGCWSD VARNAGLQRC 60 GKSCRLRWIN YLRPDLKRGA FSPQEEEVII HLHSILGNRW SQIAARLPGR TDNEIKNFWN 120 SAIKKRLKNS SSSSPNHSGS PEPKVGMGGL TALNDHEVKT MCMDSASSSS SSTMQGLSIR 180 NQYDLLPLPD VSCGMTGLGT SYFHEPTSFP QVGFGDGNYG SHGMMMGGGL MGGGCELFVP 240 ALESTSTEEN GATRNTTRNI SDPCHSHNNG VNKINGDAAV GNEIYWEGGN IRMEEWDLDD 300 LMKDVSSFPF LDFQAE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 19 | 127 | 1 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008801940.1 | 0.0 | transcription factor MYB83 | ||||
Swissprot | Q9C6U1 | 9e-78 | MYB83_ARATH; Transcription factor MYB83 | ||||
TrEMBL | A0A2H3YPJ0 | 0.0 | A0A2H3YPJ0_PHODC; transcription factor MYB83 | ||||
STRING | XP_008801940.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9821 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 3e-75 | myb domain protein 83 |
Publications ? help Back to Top | |||
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