PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s904851g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | WRKY | ||||||||
Protein Properties | Length: 239aa MW: 26587.6 Da PI: 9.5597 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.2 | 2.6e-31 | 35 | 93 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ PDK_30s904851g001 35 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 93 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-31 | 29 | 95 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.109 | 29 | 95 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.02E-26 | 32 | 95 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 34 | 94 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-26 | 36 | 93 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MARRIERRKS QAKKVVCIPA PAAAGSRSSG EVVPSDLWAW RKYGQKPIKG SPYPRGYYRC 60 SSSKGCSARK QVERSRTDPN MLVITYTSEH NHPWPTQRNA LAGSTRSQSS KNSSSALKNS 120 PRKQKPATSH EEESMAMTSS SAPAVKGEAR EMGKAIDSVE NNEFDQAFQQ SYKAMIPDSN 180 QPNDFFADLA ELEPDPMSLI FSKGSMETKP DEERGERALD PFNLFDWAGN SFEESRKGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-27 | 10 | 96 | 3 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-27 | 10 | 96 | 3 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008779946.1 | 1e-171 | probable WRKY transcription factor 14, partial | ||||
Swissprot | O64747 | 3e-75 | WRK35_ARATH; Probable WRKY transcription factor 35 | ||||
TrEMBL | A0A2H3X8H0 | 1e-170 | A0A2H3X8H0_PHODC; probable WRKY transcription factor 14 | ||||
STRING | XP_008779946.1 | 1e-171 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2592 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 2e-66 | WRKY DNA-binding protein 35 |
Publications ? help Back to Top | |||
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