PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s903491g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | LBD | ||||||||
Protein Properties | Length: 254aa MW: 27171.7 Da PI: 8.4846 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.5 | 1.2e-39 | 7 | 96 | 1 | 91 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC+++Cv+ap p +qp+kfanvh++FGasnv kll++l++ +reda++sl+yeAear+rdPvyG+vg i+ lq++l+ql+ PDK_30s903491g005 7 PCAACKFLRRKCTQGCVFAPF-PPDQPQKFANVHRIFGASNVAKLLNELSPAQREDAVNSLAYEAEARLRDPVYGCVGYISLLQHKLKQLQ 96 7*******************7.******************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.537 | 6 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-40 | 7 | 97 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MSSSNSPCAA CKFLRRKCTQ GCVFAPFPPD QPQKFANVHR IFGASNVAKL LNELSPAQRE 60 DAVNSLAYEA EARLRDPVYG CVGYISLLQH KLKQLQGASP SSAPPFGVPG MGIGMGLALA 120 AGAGTGASPH HPQILMREQQ QQMAEAQQLA VAVAAVREQE MLRSYEQQQE LARFGTGYTD 180 GRAFNQIGVS ATVAVAPGTP PGLALVSPQP IETPFLVQHL QQYPEQPRQQ QRQARPQHQR 240 AGSDEGSSGM GPSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-46 | 4 | 96 | 8 | 101 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-46 | 4 | 96 | 8 | 101 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019701995.1 | 5e-96 | LOB domain-containing protein 36 | ||||
TrEMBL | A0A427A3W7 | 1e-90 | A0A427A3W7_ENSVE; Uncharacterized protein | ||||
STRING | XP_008792688.1 | 1e-95 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6143 | 34 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 4e-53 | ASYMMETRIC LEAVES 2-like 1 |