 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PDK_30s901541g001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
HSF |
| Protein Properties |
Length: 301aa MW: 33427.4 Da PI: 9.0368 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s901541g001 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 112.5 | 2.8e-35 | 23 | 116 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv e+ weF+++ F+kg+k+
PDK_30s901541g001 23 FLTKTYQLVDDPSTDHIVSWGdDRVSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKH 105
9********************6667*****************************************999.........************** PP
XXXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkkse 103
ll++i+r+k++
PDK_30s901541g001 106 LLCEIHRRKTS 116
********987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MERCWESGGG GAVEAHKAVP APFLTKTYQL VDDPSTDHIV SWGDDRVSTF VVWRPPEFAR 60
DLLPNYFKHN NFSSFVRQLN TYGFRKVVPE RWEFANEFFR KGEKHLLCEI HRRKTSNSAA 120
PSPSSPPLFP PHHLPLYHHF PDDHHLENER LRRNNAALLS ELAHMRKLYN DIIYFVQNHV 180
RPVAPSSAAS TLLLSATNAG GAGSFYHHRK GGLNSGGSTT SSSSLTIAEE PSPPLDNNTN 240
NNNGESSSAR PKLFGVPLGE RSTSTHKRGF HLDAPTSPST KPRLVLGEDL GLNLMPPSPP 300
T
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
