PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s889901g007
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family FAR1
Protein Properties Length: 724aa    MW: 82415.9 Da    PI: 7.4324
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s889901g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.94e-2485172289
               FAR1   2 fYneYAkevGFsvrkskskkskr.ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                        fYn+YA+++GF  r+ +s++sk  ++  ++++fvCskeg  +++ +++  ++r+r + r gCka+++v ++ +++w+v+kle+ HnH+l
  PDK_30s889901g007  85 FYNDYARRLGFPFRVGRSRRSKGvEEVLIMKRFVCSKEGIYRKKPSSEGIRKRERISMREGCKAMMEVIRD-SDRWVVSKLEKAHNHHL 172
                        *********************761556799*************999999999****************999.9**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-2085172IPR004330FAR1 DNA binding domain
PfamPF105516.5E-29265356IPR018289MULE transposase domain
PROSITE profilePS5096611.301544580IPR007527Zinc finger, SWIM-type
PfamPF044342.3E-10546579IPR007527Zinc finger, SWIM-type
SMARTSM005754.5E-7555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MENARTEGDD LMEDYVECLM SLDTNARPGE SDNPILPAPA EEPTSIPVRT TEQSPTKESA  60
PVGTEEPNEP NLGMEFESDE AAKTFYNDYA RRLGFPFRVG RSRRSKGVEE VLIMKRFVCS  120
KEGIYRKKPS SEGIRKRERI SMREGCKAMM EVIRDSDRWV VSKLEKAHNH HLGTCSRVGY  180
LRARGFIETS EKASIVASDA MTLLRQNAFG EGGDAQGLLD YFKRMQAENP AFFYAIQVDN  240
NSCVTNAFWA DAKARSAYSY FGDAVTFDTT YKKNKYMMPF VTFLGVNHHL QPVIFGCALL  300
IDETEFSFIW LFETWLAAMG GRPPVSLVTD QNRAMTAAIA KVFPNTCHRF CKWLILSRSK  360
QKLAHVYSAH PLLRGELEKC VIESETVRAF ETTWVSIIDK YDLRKNTWLQ ALFNIRERWI  420
PLYLKGTFFA ELSPTQKLET MNDFYKKYFN TKTSLKVFLA QFELAMASRY EDEAQEDSDT  480
LCTKPVLKTA SPIEKQAAAI YTRAVFNKFQ EEFVESLGYN VYRIKDGTVS KFSVARDEDS  540
LETFVVTYNS AKNTATCTCK NFEFSGILCR HILGVFLMVD LRMLPEEYFL KRWTRHAKSS  600
PILDECSVEL QNSSHESITS RYNDLCRDAI KCAEKGATSI EIYKSAKNVL QKAFAEIVAF  660
EKNTGRGAQR DAININEEIT IDDAMNDQAL QDSERKQRKQ HMKLLNGISG SVGKPKPSIL  720
VHIT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785346.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026659332.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026659336.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026659343.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026659346.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026659349.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026659352.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026659354.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2H3XLD10.0A0A2H3XLD1_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008785341.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-171FAR1-related sequence 5