PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s887181g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 617aa MW: 69576.8 Da PI: 4.156

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s887181g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.2e-07	341	389	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 ++WT+eE++l+ ++v + + W+ + ++ R+ k+++s+++++ PDK_30s887181g001 341 KKWTEEEEQLFQEVVLLNPASlcknFWDHLYQVLP-SRSSKELISYYYNV 389 69***************99**********.**********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	3.0E-4	339	392	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-6	341	389	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.35E-5	341	390	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.121	342	390	IPR017877	Myb-like domain
CDD	cd00167	1.85E-6	342	390	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence Send to blast
MVFKHNKLPF TYVDPNQLAY EDLRQLDYDG QVASFEEISS SRGIPQKSLT SDGEREKVFT 60 KTQATETQED ELRPGSDSST FISVVTNKEY ENRNADSAND TSESALGDTS SMSWVTGSTS 120 EVISHTFLRK FIQSYLRWEL ENEEAAAVPK DPANKETSKQ LPWIICSRSE EETNLDSGVS 180 VHFFPSCFEE YQSANGFHQV EEMYSPLFDH PYRKLVAVGP NHQADIPQWR SREFKNSFGD 240 SDDCVSVPLT SMTSSSVHHM IDEDDSNKWV GTCVMPMPDS DSLASEVRAV HCKTDCSCLD 300 EGSIRCVRQH ITEAREKLKR MLGKHRFEEL GLYNMGEDAT KKWTEEEEQL FQEVVLLNPA 360 SLCKNFWDHL YQVLPSRSSK ELISYYYNVF MLRKRAEQNR LDPLNVDSDN DEWQESDDGE 420 FATMEENEED SVVSLANQGD LACNKDGPEE TDISEDIDDE DECDDYTIAD NNEEALCGVS 480 EGCISNKSIF CPTAQLIDKK LQNGVEQDVR GDSCMSYEGQ HNGADSGGGA ADNLDTQHSL 540 IKDHDHLLEE FGNDGGISVV TDHGFFDDHC DPKTWDMNYT HGAENDDFLS TYNVIEEVFG 600 KGAWENDAKG NHGVIQS

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence Send to blast

MVFKHNKLPF TYVDPNQLAY EDLRQLDYDG QVASFEEISS SRGIPQKSLT SDGEREKVFT  60
KTQATETQED ELRPGSDSST FISVVTNKEY ENRNADSAND TSESALGDTS SMSWVTGSTS  120
EVISHTFLRK FIQSYLRWEL ENEEAAAVPK DPANKETSKQ LPWIICSRSE EETNLDSGVS  180
VHFFPSCFEE YQSANGFHQV EEMYSPLFDH PYRKLVAVGP NHQADIPQWR SREFKNSFGD  240
SDDCVSVPLT SMTSSSVHHM IDEDDSNKWV GTCVMPMPDS DSLASEVRAV HCKTDCSCLD  300
EGSIRCVRQH ITEAREKLKR MLGKHRFEEL GLYNMGEDAT KKWTEEEEQL FQEVVLLNPA  360
SLCKNFWDHL YQVLPSRSSK ELISYYYNVF MLRKRAEQNR LDPLNVDSDN DEWQESDDGE  420
FATMEENEED SVVSLANQGD LACNKDGPEE TDISEDIDDE DECDDYTIAD NNEEALCGVS  480
EGCISNKSIF CPTAQLIDKK LQNGVEQDVR GDSCMSYEGQ HNGADSGGGA ADNLDTQHSL  540
IKDHDHLLEE FGNDGGISVV TDHGFFDDHC DPKTWDMNYT HGAENDDFLS TYNVIEEVFG  600
KGAWENDAKG NHGVIQS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008776476.1	0.0	uncharacterized protein LOC103696583
TrEMBL	A0A2H3X0G4	0.0	A0A2H3X0G4_PHODC; uncharacterized protein LOC103696583
STRING	XP_008776476.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11684	4	6