PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s884391g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 405aa    MW: 44721.5 Da    PI: 9.3012
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s884391g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.3e-20219267355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ++GVr+++ +g+WvAeIr p++   r+r++lg+f taeeAa a++ a+ kl+g
  PDK_30s884391g001 219 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFNTAEEAAMAYDMAAYKLRG 267
                        8******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.02E-23217277No hitNo description
PROSITE profilePS5103222.748218275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-31218276IPR001471AP2/ERF domain
SMARTSM003801.6E-37218281IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22218276IPR016177DNA-binding domain
PfamPF008477.3E-14219267IPR001471AP2/ERF domain
PRINTSPR003671.3E-10219230IPR001471AP2/ERF domain
PRINTSPR003671.3E-10241257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MQSASQKACR CASHCFYSED TTSAFKKGFG GGVLVHIVSE KRMEDQYPEV DYSESNAMMV  60
MALASHHHHH NQFLPSTTST PILNFLHPKS EHLMESPMEL NGMPAISQVV RPPSCSSSSS  120
GNSSSSSPTM ASKPPRSFTF FLQKEPMVQP SALLTSRNIP LSSADPNINL QMYQKLQEPG  180
MAEGLQLHHL GSISSLSYSG LETSTKGRQQ QQQQQAKLFR GVRQRHWGKW VAEIRLPRNR  240
TRVWLGTFNT AEEAAMAYDM AAYKLRGDLA HLNFPHLKHE LRDAVSGSSH PHHAATASLL  300
EAKLKASRKF SASSTSNQPK RHPEKDFLRM GVGERMPQVK KQKKTGTDEE AASTSIASTR  360
SRKELPSDLE DKKLGGDADG VLLSSMPSLD MDMIWDSLPT SASDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19217275160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777305.10.0ethylene-responsive transcription factor ERF062-like
TrEMBLA0A2H3X2G60.0A0A2H3X2G6_PHODC; ethylene-responsive transcription factor ERF062-like
STRINGXP_008777305.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2292046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.15e-33ERF family protein