PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s883821g007
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Nin-like
Protein Properties Length: 771aa    MW: 85754.6 Da    PI: 7.7643
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s883821g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK79.73e-25423473252
             RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        ek+isl++l++y+s ++k+AAk +gvc+T+LK+iCR++GI RWP+R i++l
  PDK_30s883821g007 423 EKNISLSVLQQYYSETLKKAAKRIGVCPTTLKKICRRNGILRWPSRDIRKL 473
                        79**********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.450.402.6E-673154IPR029016GAF domain-like
SuperFamilySSF557815.89E-676154IPR029016GAF domain-like
PROSITE profilePS5151915.46408493IPR003035RWP-RK domain
PfamPF020424.2E-21425473IPR003035RWP-RK domain
SuperFamilySSF542775.89E-21662755No hitNo description
SMARTSM006661.0E-18672754IPR000270PB1 domain
PROSITE profilePS5174519.016672754IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.1E-19673753No hitNo description
PfamPF005641.5E-16674753IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MGVSLSERLL MALSLFKESS GAGILAQVWM PVNQGDEYIL STYEQPYLLD QTLAGYREVS  60
RAYTFSAKEA PGSITGLPGR VFVSGMPEWT SNAVHYHRQE YLRVDHARHY DVRGILAVPI  120
FDLNEHSCCG VLELVTVKEK SDFDSEMDSI FQALQSLKMG QKSAFTEILD VLRAICHAHM  180
LPLALTWIPL SNNDEGMDEC TRDVAEANSI SGRKIMLCIQ ESACYVSDQQ MQGFLHACSE  240
HHLQNGQGIA GKAIQSTHAI FSPDVKSCDV HQYPLAHHAR KFGLHAAVAI RLRSTHTGND  300
DYILEFFLPI HCKGSAEQQL LLNNMSTTLQ RICRSLRTVS DTKVVRTDVT KEGPGTRQTI  360
PISAEHSQSL RDDAELNLTE LSSKFQNMET EIGRFFLRCN GGSEKTLPPK IIKHPKKKRS  420
TVEKNISLSV LQQYYSETLK KAAKRIGVCP TTLKKICRRN GILRWPSRDI RKLSHSMRTF  480
QSMIDSVPGV AGILKYDNAT GKHFTVVSSP EKQAAIASEP SRQGLPDQFV GNLEEETCLV  540
GRNQISNSGQ PQLHHHEANI ACVPPFGIGD KSKVTSSGGP SSLAKEKCCH DASSKGGLSS  600
ESLKCSIRSK SSCPMAALEE MHTEMDASER IIERSRPSYS SMTDSSSGSA SSRPSIKRSL  660
KNNMFAADFG SAIHVKATYK EETVRFKFSL SMGFHELIEV IGKRFKLHSG TFRLRYWDDE  720
EEWVILANES DLQECVEVLQ YMESQRLRLL VQDFPCATGS SASSNSLLMR P
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788345.20.0protein NLP2
SwissprotQ0JC270.0NLP2_ORYSJ; Protein NLP2
TrEMBLA0A2H3XT010.0A0A2H3XT01_PHODC; protein NLP2
STRINGXP_008788345.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-169Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]