PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s883061g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 90aa MW: 10358.6 Da PI: 4.9692 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.4 | 2.9e-16 | 10 | 47 | 2 | 39 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 ri++k rqv+fsk + ++KKA+EL +LCdaev ++ PDK_30s883061g001 10 RIKDKASRQVSFSKWWTSLFKKAHELAILCDAEVDLVF 47 8*********************************9874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 7.46E-17 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-13 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.002 | 1 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-13 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-15 | 10 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-13 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-13 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MRRGKVQLRR IKDKASRQVS FSKWWTSLFK KAHELAILCD AEVDLVFSPE VEDRTKEEVS 60 EVDEDGIKDR EAFEGAADLG DEQANVRPHN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008806426.1 | 1e-17 | MADS-box transcription factor 51-like isoform X1 | ||||
Refseq | XP_008806427.1 | 1e-17 | MADS-box transcription factor 51-like isoform X3 | ||||
Refseq | XP_008806429.1 | 6e-18 | MADS-box protein EJ2-like isoform X4 | ||||
Refseq | XP_026665065.1 | 1e-17 | MADS-box transcription factor 51-like isoform X2 | ||||
Swissprot | Q9XJ61 | 2e-16 | MAD51_ORYSJ; MADS-box transcription factor 51 | ||||
TrEMBL | A0A2H3YZX5 | 3e-16 | A0A2H3YZX5_PHODC; MADS-box transcription factor 51-like isoform X1 | ||||
TrEMBL | A0A2H3Z038 | 1e-16 | A0A2H3Z038_PHODC; MADS-box protein EJ2-like isoform X4 | ||||
TrEMBL | A0A2H3Z0I9 | 2e-16 | A0A2H3Z0I9_PHODC; MADS-box transcription factor 51-like isoform X3 | ||||
TrEMBL | A0A3Q0IHM7 | 2e-16 | A0A3Q0IHM7_PHODC; MADS-box transcription factor 51-like isoform X2 | ||||
STRING | XP_008806426.1 | 5e-17 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30260.1 | 5e-16 | AGAMOUS-like 79 |
Publications ? help Back to Top | |||
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