PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s882821g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family SBP
Protein Properties Length: 547aa    MW: 59965.4 Da    PI: 8.2125
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s882821g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.6e-41238315178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +CqvegC++dls ak+yhr+h+vCe hsk+p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+
  PDK_30s882821g001 238 CCQVEGCNVDLSGAKDYHRKHRVCENHSKSPRVIVAGQERRFCQQCSRFHDLSEFDQKKRSCRRRLSDHNARRRKPQP 315
                        6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.8E-33231300IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.59236313IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.24E-38237319IPR004333Transcription factor, SBP-box
PfamPF031105.8E-32239312IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
LSFEFLGWEQ GTAGVVLEVH RSTTYKSTGG ISYEFLCDLV GGRSWRRGVG EVLHPKEGLY  60
FEMEWNTKSC SLWDWDNLAL FGGNSKQELQ TNWKVEVKAA GGIDNGLVYS SVGGGSGGGG  120
ACSGSDLGNG SSSKSSISAS IDSSSKAGVK ISEFNFDGVN KDSMRVQDGG SSAAVVTAAM  180
SQESLIGLKL GKRTYFEDVC AGSNVKNLPS SSSSVSEVLP AGVVKKPRVT QQTVQSTCCQ  240
VEGCNVDLSG AKDYHRKHRV CENHSKSPRV IVAGQERRFC QQCSRFHDLS EFDQKKRSCR  300
RRLSDHNARR RKPQPDTISF NSTRLSSPFY ALLWNEKSMS WEISLLCGCG WGSLYTPWIL  360
TCPIPKDWKI GPVKALLEKK TFDLADDRQN FLWNQPPFGQ MRPTIVDIIL LSVKPPSDLA  420
SLAMLNRPGF PPYFLRSPEV SLTASNLDGA LDLRRALSLL STNSWGSADP GTTSSLVQLG  480
HANHTGTAQP AVHVMSSTSE YWQDEHALAQ HGRVLPIAAH RSGSQFQEFQ LLRSPYETTF  540
FDSNQIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-262393121184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294311KKRSCRRRLSDHNARRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781704.10.0squamosa promoter-binding-like protein 12
RefseqXP_026658154.10.0squamosa promoter-binding-like protein 12
TrEMBLA0A2H3XCK40.0A0A2H3XCK4_PHODC; squamosa promoter-binding-like protein 12
STRINGXP_008781704.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.34e-44squamosa promoter binding protein-like 2