PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s881031g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | SBP | ||||||||
Protein Properties | Length: 205aa MW: 22202.4 Da PI: 10.0735 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 50.5 | 5.4e-16 | 3 | 33 | 47 | 77 |
SSEEETTT--SS--S-STTTT-------S-- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77 +rfh l+efDe+krsCr+rLa+hn+rrrk+q PDK_30s881031g001 3 ARFHVLTEFDEAKRSCRKRLADHNRRRRKPQ 33 7****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 14.811 | 1 | 32 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 4.7E-5 | 3 | 19 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.0E-8 | 3 | 31 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.73E-12 | 3 | 35 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MAARFHVLTE FDEAKRSCRK RLADHNRRRR KPQLPAANAD SPAPENPPTN SMEKSKQTAK 60 APRDDSTVKS AATISNASTS LEGQQGYSNK ATRLRNGPAL SLGGVGAVEK RGMGSSSAMC 120 QSQGHFVAMT EDKVSQQQHQ QQQRFFSSPS ATGGTFFHHH NLFCSSSNEA SQSTGGGSGD 180 ASSHHHHHQS NLLHLGQAMF EVDFM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 31 | KRSCRKRLADHNRRRRKP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008781929.1 | 1e-145 | squamosa promoter-binding-like protein 10 | ||||
TrEMBL | A0A2H3XD40 | 1e-143 | A0A2H3XD40_PHODC; squamosa promoter-binding-like protein 10 | ||||
STRING | XP_008781929.1 | 1e-144 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6990 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 8e-12 | SBP family protein |