PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s877781g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 282aa    MW: 31798.6 Da    PI: 8.0593
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s877781g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00025981123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C + F++   L  H+++H
  PDK_30s877781g003 59 YSCSFCRREFRSAQALGGHMNVH 81
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.05E-65685No hitNo description
PROSITE profilePS5015711.2195986IPR007087Zinc finger, C2H2
SMARTSM003550.00985981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEKTRYWMWS RRKLSERPLS SQIPPTSVGS SYSESWEEQA FAEDSAGHLG GCIWPPRSYS  60
CSFCRREFRS AQALGGHMNV HRRDRARLKQ SSSPTSEALE NSDHHLNPCS VPLKRTQYPA  120
QLGPLVYNSN PKPNPNCGVV ESPLSPSKVS AASTQENLSA HTLISPSYSS CVIRENLKES  180
LFSTTRSLKT SIPDGPFTIP ELKIGRENLR LREAGCQARR DPDDEEEEAI TIKRRRIDST  240
SFFVRRSPDD WQQDQAEVLK FSPGPVEELD LELRLGDPPK VK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-135481229superman protein
2l1o_A8e-135481229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232236KRRRI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008801652.10.0zinc finger protein 10
TrEMBLA0A2H3YPE40.0A0A2H3YPE4_PHODC; zinc finger protein 10
STRINGXP_008801652.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-29C2H2 family protein