PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s871351g008

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

ERF

Protein Properties

Length: 287aa MW: 31258.3 Da PI: 9.0893

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s871351g008	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.2	1.3e-15	111	163	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g+ PDK_30s871351g008 111 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDVAAIKFRGA 163 57**************988532...5***********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	2.5E-4	24	82	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.7E-9	43	78	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.7E-9	46	77	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	10.56	46	76	IPR001471	AP2/ERF domain
CDD	cd00018	3.71E-11	46	77	No hit	No description
CDD	cd00018	8.08E-26	111	172	No hit	No description
Pfam	PF00847	9.6E-11	111	162	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.62E-18	111	172	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.0E-19	112	171	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-32	112	176	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.19	112	170	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.1E-5	113	124	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.1E-5	152	172	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MGRSGRAGKG FKYYTCQCSL FLMLYIGIGP YNMESALTSS QQLRPLGGYD NEEKAARAYD 60 LAALKYWGPT ATTNFPVKIY SREIEEMKAM SKQEFIASLR RKSSGFSRGA SIYRGVTRHH 120 QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDVAAIKF RGAGAVTNFE LSRYDVEAIA 180 STDLPIGASA RRIKQSLQAS SNQLTLSSSS ISQRPTLMPS SLLHNLLQLP TSSGPSGPLT 240 CSSLVPTEPD ACSQSMCWLA ADDQNSNHNN PPMGSGILQL THLAPSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269\|PubMed:15988559}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019706210.1	1e-158	AP2-like ethylene-responsive transcription factor AIL5 isoform X3
Refseq	XP_029120403.1	1e-158	AP2-like ethylene-responsive transcription factor AIL5 isoform X3
Swissprot	Q6PQQ3	1e-83	AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBL	A0A2H3Y4V6	1e-140	A0A2H3Y4V6_PHODC; AP2-like ethylene-responsive transcription factor AIL5
STRING	XP_008793348.1	1e-143	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13579	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	3e-78	AINTEGUMENTA-like 5

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Molitor AM,Bu Z,Yu Y,Shen WH Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes. PLoS Genet., 2014. 10(1): p. e1004091 [PMID:24465219] Feng J,Chen D,Berr A,Shen WH ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development. Plant Physiol., 2016. 172(3): p. 1746-1759 [PMID:27630184] Santuari L, et al. The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]