PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 405aa MW: 45476.5 Da PI: 6.0724

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s867661g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.3	5.3e-52	14	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ++pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLp + ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++ PDK_30s867661g004 14 MMPGFRFHPTDEELVGFYLKRKIQQKPLSI-ELIRQLDIYKYDPWDLPkELAATGEKEWYFYCPRDRKYRNSDRPNRVTGAGFWKATGTDRP 104 579*************************.89***********445566889******************************* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl PDK_30s867661g004 105 ICSSdGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142 956667**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.02E-58	10	173	IPR003441	NAC domain
PROSITE profile	PS51005	57.064	14	173	IPR003441	NAC domain
Pfam	PF02365	1.3E-25	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MDERSDMDKG DEVMMPGFRF HPTDEELVGF YLKRKIQQKP LSIELIRQLD IYKYDPWDLP 60 KELAATGEKE WYFYCPRDRK YRNSDRPNRV TGAGFWKATG TDRPICSSDG TKCIGLKKSL 120 VFYRGRAAKG IKTDWMMHEF RLPSPSNPSM PKRPLDKHIP ANDSWAICRI FQKTNSMAQK 180 ALSHSWVSPL PETNEQDVFS VSRSAHGIPF ASENMSCMAQ VGSAIQFGCN KSIQQQACTT 240 SYSPLDITSY KPIDLSSCKP SNLLPVSSAE IPKSFMFSPD EMSMLSKCTV DAASMLFNSS 300 PTIIGDVEET SASIDFEELQ QCGFTVGLPL EMSTSLGSGE EDISAKKPAN TCNVNNNQWG 360 AVKTVNFPFS LQSNLSDEWK SNMPWDSPQC PIEMSTSYSI NRCYT

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MDERSDMDKG DEVMMPGFRF HPTDEELVGF YLKRKIQQKP LSIELIRQLD IYKYDPWDLP  60
KELAATGEKE WYFYCPRDRK YRNSDRPNRV TGAGFWKATG TDRPICSSDG TKCIGLKKSL  120
VFYRGRAAKG IKTDWMMHEF RLPSPSNPSM PKRPLDKHIP ANDSWAICRI FQKTNSMAQK  180
ALSHSWVSPL PETNEQDVFS VSRSAHGIPF ASENMSCMAQ VGSAIQFGCN KSIQQQACTT  240
SYSPLDITSY KPIDLSSCKP SNLLPVSSAE IPKSFMFSPD EMSMLSKCTV DAASMLFNSS  300
PTIIGDVEET SASIDFEELQ QCGFTVGLPL EMSTSLGSGE EDISAKKPAN TCNVNNNQWG  360
AVKTVNFPFS LQSNLSDEWK SNMPWDSPQC PIEMSTSYSI NRCYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	16	180	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	16	180	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	16	180	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	16	180	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	16	180	22	174	NAC domain-containing protein 19
3swm_B	2e-52	16	180	22	174	NAC domain-containing protein 19
3swm_C	2e-52	16	180	22	174	NAC domain-containing protein 19
3swm_D	2e-52	16	180	22	174	NAC domain-containing protein 19
3swp_A	2e-52	16	180	22	174	NAC domain-containing protein 19
3swp_B	2e-52	16	180	22	174	NAC domain-containing protein 19
3swp_C	2e-52	16	180	22	174	NAC domain-containing protein 19
3swp_D	2e-52	16	180	22	174	NAC domain-containing protein 19
4dul_A	2e-52	16	180	19	171	NAC domain-containing protein 19
4dul_B	2e-52	16	180	19	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026664009.1	0.0	protein FEZ-like
Swissprot	Q9ZVH0	1e-102	FEZ_ARATH; Protein FEZ
TrEMBL	A0A3Q0IAZ4	0.0	A0A3Q0IAZ4_PHODC; protein FEZ-like
STRING	XP_008802608.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-104	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]