PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s864791g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family G2-like
Protein Properties Length: 517aa    MW: 57467.2 Da    PI: 6.2634
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s864791g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.85e-28278331155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k +++Wtp+LH+rFv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR 
  PDK_30s864791g001 278 KMKVDWTPDLHRRFVQAVEQL-GVDQAIPSKILELMKVEGLTRHNVASHLQKYRK 331
                        5689*****************.********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.83275334IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-27276334IPR009057Homeodomain-like
SuperFamilySSF466894.48E-18276334IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-25278332IPR006447Myb domain, plants
PfamPF002494.9E-8281330IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
SLYCNERDAL EAISKNDEGF HVAIVEVATG TCQGSFRFLE MARDLPTVDF PKGLRVLLLD  60
ENGPSADETK LQLEAMDYIG GSVLSKSLKP IKETVVSMLQ LQTETGELKI ETQSEAENTE  120
KEHENRHENA VANDRFPGPS TPQQEHGGRL LSDGDCQERT NCSIERGCTE NIKDSLDARN  180
CSSLESKSVE NTCNNSIPAA NTEEILPSRP EEAATEGEVN SADGSKTTDD QCSGAKEVSL  240
PSSSLHNGDN VEASADDSKK LVANSNSYSN GSRSNKKKMK VDWTPDLHRR FVQAVEQLGV  300
DQAIPSKILE LMKVEGLTRH NVASHLQKYR KQRRHILPKE DDRRWQPYRD PTPMGFMHKP  360
LVALHPYHPH CGVPFGHSYP AWAHPSYHPP GVQMWGHPGF PTRHQPPESW VWKTYPGINA  420
DAWGCPVLPP YNHYTVPTRS LMSNGSNAIG NGNWQFRDSY DLHQAEEVID SVVKEAMSKP  480
WLPLPLGLKP PSTDSVLAEL RRQGFRAIPP ATKPPPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-16283330653Transcription factor LUX
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784680.10.0two-component response regulator-like APRR2
RefseqXP_008784681.10.0two-component response regulator-like APRR2
RefseqXP_008784682.10.0two-component response regulator-like APRR2
TrEMBLA0A2H3XJH80.0A0A2H3XJH8_PHODC; two-component response regulator-like APRR2
STRINGXP_008784680.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2076367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.63e-75ARR-B family protein