PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s864051g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 325aa MW: 35932.9 Da PI: 4.4705

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s864051g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.7	1.7e-07	148	184	13	54
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 R+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L PDK_30s864051g004 148 RKRLNDRLSMLRSIVPKiS------KMDRTSILSDTIDYMKEL 184 89*************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.65E-7	130	189	No hit	No description
PROSITE profile	PS50888	11.331	135	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.8E-6	142	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-11	148	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-11	148	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-5	148	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00127	234	297	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MELDELGFLE ELLALRGETW DTLPNGMSEF FSSEGSLDCF QESQGLVPPS FSAFEGLAAA 60 PAEPSFDCLS EVYCLLGAGF AAAAPEIHSS SVQSALEDGK TGRPVHGDGQ TVCKVEMGPV 120 VLGMGGRMDR KKRRAEGLQS KNLMAESRKR LNDRLSMLRS IVPKISKMDR TSILSDTIDY 180 MKELLERIKR LQEEIELGSE QPNLLGIFKE QLNPNDILVR NSPKFDVDRR DSDTRIEICC 240 TSKTGLLLST VNTLEALGLD IQQCVISCFN DFGMQASCSE DMEQRAAISS EEIKQALFRN 300 AGYGGSYLDA YLYPSLMIVS MQYRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008811793.1	0.0	transcription factor bHLH93-like
Swissprot	Q9LSL1	2e-77	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A2H3ZCP7	0.0	A0A2H3ZCP7_PHODC; transcription factor bHLH93-like
STRING	XP_008811793.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1302	37	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-77	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]