PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s863771g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 208aa MW: 23920.1 Da PI: 10.1719 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.6e-06 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PDK_30s863771g001 79 FVCEICNKGFQRDQNLQLHRRGH 101 89*******************88 PP | |||||||
2 | zf-C2H2 | 13 | 0.00031 | 156 | 178 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k++ +s+ k H +t+ PDK_30s863771g001 156 WKCDRCSKTYAVHSDWKAHVKTC 178 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.8E-8 | 78 | 101 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.3E-6 | 78 | 101 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 2.6E-5 | 79 | 101 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 79 | 101 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 79 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 91 | 121 | 151 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.9E-5 | 144 | 177 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.8E-8 | 151 | 176 | No hit | No description |
SMART | SM00355 | 70 | 156 | 183 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MSNSTSISEE ASVSSETRAH DFNKSLSSPL TPISPPHYQQ QQQEPQPKSQ KKRSQPGNPD 60 PDAEVIALSP KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRRR SSKEGMRKRV 120 YVCPEPTCVH HHPSRALGDL TGIKKHYSRK HGEKKWKCDR CSKTYAVHSD WKAHVKTCGT 180 REHRCDCGTL FSRLVISFMF YDSNSFTI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-20 | 152 | 193 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 3e-20 | 152 | 193 | 3 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008788632.1 | 1e-143 | protein indeterminate-domain 7-like | ||||
Swissprot | Q8H1F5 | 1e-95 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A2H3XTV1 | 1e-141 | A0A2H3XTV1_PHODC; protein indeterminate-domain 7-like | ||||
STRING | XP_008788632.1 | 1e-142 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 5e-88 | indeterminate(ID)-domain 7 |
Publications ? help Back to Top | |||
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