PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s861851g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family LBD
Protein Properties Length: 667aa    MW: 75211.5 Da    PI: 6.5025
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s861851g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601201.3e-375126121101
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaC++lrr+Ca dC+l+pyfpa++p++fa+vhk+FGasnv ++l++lp ++r +a++++ +eA +r++dPvyG+vg+i+ lq+++   ++
  PDK_30s861851g002 512 RCAACRYLRRRCAGDCILSPYFPASNPQRFACVHKIFGASNVARMLQQLPVHQRARAADAISMEAYWRVQDPVYGSVGIINLLQHEIYMNQH 603
                        6******************************************************************************************* PP

             DUF260  93 elallkeel 101
                        ela++++++
  PDK_30s861851g002 604 ELARTQAQI 612
                        ****99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF500227.53E-1065119IPR017941Rieske [2Fe-2S] iron-sulphur domain
PROSITE profilePS5129610.335190237IPR017941Rieske [2Fe-2S] iron-sulphur domain
Gene3DG3DSA:2.102.10.101.1E-7191229IPR017941Rieske [2Fe-2S] iron-sulphur domain
SuperFamilySSF500221.57E-10191219IPR017941Rieske [2Fe-2S] iron-sulphur domain
Gene3DG3DSA:3.90.380.101.3E-20261357IPR015879Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain
SuperFamilySSF500221.57E-10263340IPR017941Rieske [2Fe-2S] iron-sulphur domain
SuperFamilySSF559615.57E-20298355No hitNo description
PfamPF008483.9E-13316460IPR015879Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain
SuperFamilySSF559615.57E-20394465No hitNo description
Gene3DG3DSA:3.90.380.105.7E-7406480IPR015879Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain
PROSITE profilePS5089124.151511612IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-36512609IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0019439Biological Processaromatic compound catabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0005506Molecular Functioniron ion binding
GO:0016708Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MAIGQALAAL CSSKTLIPRS FLSSSSASAR PRGVRLACSS WSLPSPSPEI GISDTHALRR  60
TVEAFDPRIP LAEALTPPSS WYTDPSFFAF EFERVFLRGW QAVGYTEQIK NPHDFFTGRS  120
DKHEMQHKTL TSIKWAYRTI ERCLDCLRGP DLPIVFDGVK KCKKADLTGI SYISVSIVNP  180
LYVAYFLYSS SGSGQKSCFV CPYHGWTYGL DGALLKATRI TGIKNFNKDV RRVIALISFI  240
IGSSPDLKLT RMLGSVNGGQ EFGLMPLSVA TWGPFVLINL DKDTVPQQNF ANDLVHNEWL  300
GSASDIISND GIDSSLKHVC RREYTIRCNW KVFCDNYLDG GYHVPYAHGG LASGLKLDSY  360
STLWIIIILF FHSMFLLFLN PECYDGETYT FVIFEKVSIQ RCEGASVDED DFDRLGSKAV  420
YAFIYPNFMI NRYGPWLDTN LVIPLGSTNC QVIFDYFLDH SLLDDKVFIE RSLKESERVQ  480
LSDSLKSIED PIQPIMSSSN STVSSSDSNP RRCAACRYLR RRCAGDCILS PYFPASNPQR  540
FACVHKIFGA SNVARMLQQL PVHQRARAAD AISMEAYWRV QDPVYGSVGI INLLQHEIYM  600
NQHELARTQA QIAMHTAQQQ QQQQEEEEEE AQQASQPVEA PNMHPQQQDL FAPDRTYLDL  660
SHFPDFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3051361212111LOB family transfactor Ramosa2.1
5ly0_B1e-3051361212111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008801514.10.0choline monooxygenase, chloroplastic
TrEMBLA0A2H3YP310.0A0A2H3YP31_PHODC; choline monooxygenase, chloroplastic
STRINGXP_008801514.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.13e-31LOB domain-containing protein 24