PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s847891g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GATA
Protein Properties Length: 340aa    MW: 38105.1 Da    PI: 8.588
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s847891g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.41.1e-14225258132
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                        C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ 
  PDK_30s847891g001 225 CQNCGISEkmTPAMRRGPAGPRSLCNACGLMWAN 258
                        ********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.0952358IPR010399Tify domain
SMARTSM009793.0E-92358IPR010399Tify domain
PfamPF062002.5E-132457IPR010399Tify domain
PROSITE profilePS510178.7584126IPR010402CCT domain
PfamPF062031.7E-984111IPR010402CCT domain
SMARTSM004014.8E-6219273IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-9221264No hitNo description
Gene3DG3DSA:3.30.50.101.0E-12224259IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.98E-11225274No hitNo description
PROSITE patternPS003440225252IPR000679Zinc finger, GATA-type
PfamPF003202.3E-12225259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSTTAADLPM NHDDGVDAAV PLVSPTSNQL TLLYQGEVYV FESVSPEKVQ AVLLLLGGCE  60
MPVLAGMALP FLQDDRHTTM PAKRIASLIR FREKRKERCF DKKIRYNVRK EIGLLLDPDL  120
THGFKNQVSP GLTGQNEVAN DELNPRKSGV TKLEVQYAIW FRQNDAKNAE RICYNVQHSQ  180
GTRMKRRKGQ FAGKANPEDE ASASSSCDPA QNFSYDDNPR ETKNCQNCGI SEKMTPAMRR  240
GPAGPRSLCN ACGLMWANKP FVQGIQNRYR EPYQYVTGSK WYSTCPISSQ ASNTFSDSQP  300
RYHLNPCRTG WYGLVPFSSD WYGLANIDTM VRHTGPNCTV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775860.16e-73GATA transcription factor 19-like
SwissprotA2XKR74e-35GAT18_ORYSI; GATA transcription factor 18
TrEMBLA0A2H3WZ281e-71A0A2H3WZ28_PHODC; GATA transcription factor 19-like
STRINGXP_008775860.12e-72(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.27e-30ZIM-like 1