PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s842671g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 353aa    MW: 39650.1 Da    PI: 10.3289
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s842671g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.3e-31286343258
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                         D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh
  PDK_30s842671g002 286 ADEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCVDDPSMLIVTYEGEHNH 343
                        69************************9988**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.5E-17238283IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.5E-34273344IPR003657WRKY domain
PROSITE profilePS5081130.136280343IPR003657WRKY domain
SuperFamilySSF1182902.88E-27283344IPR003657WRKY domain
SMARTSM007743.3E-39285345IPR003657WRKY domain
PfamPF031061.5E-27287343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEEVEIANRT AVESCHRVFD LLSQSQDKLR LYRNLVAETE EAVSKFKKVV SKLSSEAGHA  60
RVRRLNKALS PFNHKIFLDS PIVSRPIPSP VPLQLLPRDP IELPVRELGS STKIPQQIPQ  120
RMFLENPALD QDTASRGTLQ LGLQAPSTHL HFLQQQQNNQ KFQIQQQFKC QSEMYSRSNN  180
GINLKFDNSS CTATGSSSRS FLSSLSVDRS VASMDGRPFH LISGPESSNP INLNQPPRRR  240
CIGKGEDGSG RCATAGRCHC SKKRKLRVRR SIKVPAISNK LSDIPADEYS WRKYGQKPIK  300
GSPHPRGYYK CSSMRGCPAR KHVERCVDDP SMLIVTYEGE HNHGRLLSQS VHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20278343771WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802836.10.0protein WRKY1
RefseqXP_026664051.10.0protein WRKY1
SwissprotQ32SG41e-112WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A2H3YRQ70.0A0A2H3YRQ7_PHODC; protein WRKY1
STRINGXP_008802836.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-78WRKY DNA-binding protein 39