PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s839611g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family FAR1
Protein Properties Length: 1481aa    MW: 164220 Da    PI: 7.6924
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s839611g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR194.61.2e-29524616290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                        fYn+YA+ +GF++r+s  ++s+r+g+it+r+fvC keg+r+  +k+    + k rrtra+tr+gCka+++vkk+++g+w+v++le+ HnH+l
  PDK_30s839611g001 524 FYNSYARLLGFNTRISIFHRSRRDGSITSRQFVCAKEGFRTYGTKQdpcgEGKPRRTRAVTRVGCKAMIRVKKQENGRWVVSRLEKAHNHDL 615
                        ******************************************9999999999***************************************9 PP

               FAR1  90 a 90 
                        +
  PDK_30s839611g001 616 M 616
                        6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.150.1102.3E-28256340IPR027421DNA polymerase family X lyase domain
SuperFamilySSF478024.32E-19256335IPR010996DNA polymerase beta-like, N-terminal domain
SMARTSM004830.0022260580IPR002054DNA-directed DNA polymerase X
PfamPF147166.7E-14262327IPR010996DNA polymerase beta-like, N-terminal domain
PfamPF031013.3E-27524616IPR004330FAR1 DNA binding domain
PfamPF105512.8E-24728821IPR018289MULE transposase domain
PfamPF044349.3E-4938956IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003887Molecular FunctionDNA-directed DNA polymerase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1481 aa     Download sequence    Send to blast
MSLNVPPVAL CSLPYSEPSF QMSWLAYDDH ALPWINLWTH DIINKKFSRR ADYNTIWKQK  60
LTQMGALVED SFSKRVTHVL AMNSNALFQQ VNHEHLQRFK GKRIQAILFL SINIFQESYK  120
SRKRKGEKVP EDPYALNFED VNKSDENEGK ECSESAEVRH CDDGSPCSKR LKISFEESKA  180
AGPSSKEDHQ LMGEQGELTS DHQYMRMHIG DEALTTEKGP KPCVMNHNSS EAVHPSRNAS  240
DATKDEAGVS QLSSLYNPPD LNKNITEIFG KLINIYRALG DERRSFSYYK AIPVIEKLPF  300
NIESADQVKD LPTIGKSLQD HIQEIVTTGK LSKLEYFEKD EKVRRIGVGG CMGWRSVRHE  360
LKCLIQFFRC DFKIKRTTYG LIPLVKGDHE ENKGEGEIRR GGEGGMGRVL PRGCGDKGKE  420
KAVIGVSRRG LHLRLKLGPN PAKSHSAIGF MEGTVSCGGE SMETEMGHRD SDGMEYGLEL  480
VVERSSGEGE EMPASPVARS QGGDAKIEPF EGMEFATEED AWTFYNSYAR LLGFNTRISI  540
FHRSRRDGSI TSRQFVCAKE GFRTYGTKQD PCGEGKPRRT RAVTRVGCKA MIRVKKQENG  600
RWVVSRLEKA HNHDLMAPSR VHCLRSHRLL SESGKRAAND FQRARADHGS EMLAIKEESH  660
EPRVCYSEII PKTKVGRENH SIVEYIKHMQ AEDPGLFYAQ QLDGDQSVGN VFWADARSRM  720
AYKHFGDVVT FDTLYKMHQH QIPFATFTGV NHHRQPVLFG CALIVDDSES SLTWIFEMLH  780
SAMSGQHPTS MISEQDRVIQ AAMSHVFPHT RHRSCKWHIL KDGQDKLSHV FLAYPSFKEE  840
FHQCINMTGT IDEFESSWRS LVARFDLRDN KWLQSVYGCR HQWVPVYLKN TFFGETSSTQ  900
RCESRSSFFK GYINAQTDAQ TFIQQYEKAL DSWYEKEMFE YSGILCRHIL TVFSELGVNM  960
LPSHYILKRW TRNAKDEGVS GINHRVVKDE EKDDSQSNSQ DCQQSPTWRY NSLCREAIKF  1020
AEDGATSMAI YNVAMRALQE AAKKVTTAKK NVGKVGCQGA FPNRSTDKEN GAAAPLVLNT  1080
PNGQVCYTLS SDHLLVHSTR GMNLPVSLTV QRQLFPSTIP ASGLNENGSL MLTVPLMSIQ  1140
RGDPKFAGTA SQPPQKNIPH LDVGRLFKPF LYLLGDAMSN NNFPQCSRET SASCCIKHSV  1200
ASRFGWDLSI SPLRAALTGL NLVTIGHSNA SPGTGSNTAS LSSSMPFVAV PMEFCVPLVA  1260
NLSAASSAPS NSSSTRYSGG TSPALHQLQL APHLVTAQQS HTATPDGAPD SPATVDDPSR  1320
LPLVFTNPIR AAALAAGARI ASPSDAASII KAVQSKNAIH IRAGECSPSS LKPLGPKPSA  1380
PHPANVHFVP VNRSGTVNVV LPGNKQVQGG FSGTMTTSKA GNLHGQAVLR KELIKDEMAT  1440
DGDSEDQTLE EGAMEFTDSE DDEVFTDAEA GGGPGVSWAA G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026657279.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_026657280.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_026657281.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_026657282.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X2
RefseqXP_026657284.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X4
RefseqXP_026657285.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X5
RefseqXP_026657286.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X6
TrEMBLA0A3Q0HRR20.0A0A3Q0HRR2_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X6
TrEMBLA0A3Q0HS660.0A0A3Q0HS66_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A3Q0HS690.0A0A3Q0HS69_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X4
TrEMBLA0A3Q0HUW50.0A0A3Q0HUW5_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A3Q0HVA80.0A0A3Q0HVA8_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X5
STRINGXP_008778264.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-139FAR1-related sequence 5