PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s839411g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARR-B
Protein Properties Length: 441aa    MW: 48678.8 Da    PI: 7.2235
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s839411g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.11.9e-28192245155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ +LH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  PDK_30s839411g004 192 KPRVVWSVDLHRKFVAAVNQL-GIDKAVPKRILDLMNVEKLTRENVASHLQKYRL 245
                        79*******************.********************************8 PP
2Response_reg77.64.5e-2631111109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl vdD+p+ ++ll+ +l++ +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ + +
  PDK_30s839411g004   3 VLAVDDDPTCLKLLEILLRRCQY-QVTTTNQAITALKMLRENRdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETKTVMKGI 92 
                        799********************.***************999889*******************87754.558******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp+ +eel +
  PDK_30s839411g004  93 THGACDYLLKPVRIEELKN 111
                        ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004486.0E-331113IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363922.1E-1661440IPR017053Response regulator B-type, plant
SuperFamilySSF521726.26E-361124IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.1E-421144No hitNo description
PROSITE profilePS5011043.322117IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-233111IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.46E-284116No hitNo description
Gene3DG3DSA:1.10.10.603.2E-30189250IPR009057Homeodomain-like
PROSITE profilePS5129411.062189248IPR017930Myb domain
SuperFamilySSF466893.23E-19190249IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-25192245IPR006447Myb domain, plants
PfamPF002494.5E-6194244IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MRVLAVDDDP TCLKLLEILL RRCQYQVTTT NQAITALKML RENRDRFDLV ISDVHMPDMD  60
GFKLLELVGL EMDLPVIMLS ANGETKTVMK GITHGACDYL LKPVRIEELK NVWQHVVRRR  120
KFDHRDHNNY DNVGDSEKPQ HANSEGGQDH IPSESSDHGG KLNRKRKDQN EDEDDDGQEN  180
MHENADSSAQ KKPRVVWSVD LHRKFVAAVN QLGIDKAVPK RILDLMNVEK LTRENVASHL  240
QKYRLYLKRL SAVASQQAKM VAAFGGRDHS YLPMGSLDGY GSFHTLSASG QLPALSSFQT  300
NGGLSGTNPA GYGLRGFTAS RIVQPGRVHG NTSNPINDLG KLQRIDLPGS QHGNLLQGMP  360
TALELDQLQQ HKTMQDADIH LPGGFSGAGL STGSSSNISV SVTNNPFLSQ AHQQHMQSMV  420
LGNHSSVGMS VNSDPFQSTI L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-25188251164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794327.10.0two-component response regulator ORR23-like isoform X2
SwissprotQ6K8X61e-164ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A2H3Y6U50.0A0A2H3Y6U5_PHODC; Two-component response regulator
STRINGXP_008794326.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-122response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]