PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s837171g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | bHLH | ||||||||
Protein Properties | Length: 318aa MW: 35201.9 Da PI: 8.4621 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.6 | 3.8e-12 | 149 | 194 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f eL ++P + kK +Ka++Le+A +Y+k+L+ PDK_30s837171g001 149 HVIAERKRREKLSQRFIELSAVIPGL-----KKRDKASVLEEAAKYVKQLE 194 899***********************.....9*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.764 | 144 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.54E-15 | 147 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-14 | 148 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.81E-11 | 149 | 198 | No hit | No description |
Pfam | PF00010 | 1.2E-9 | 149 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-12 | 150 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 9.484 | 251 | 318 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDESSFIYEC DISSFNEFTP QRVAPALVGG FQQPLSSESY TSYPPFNPVE TPSRIGLIER 60 PKKIQKINSW NSRTTEQNPT LGPDASSADS LLFRNSNSPN DELRRASASQ ENMRALVSNG 120 SAQDYETLVQ QGSKMIKTGS MPSQAHDEHV IAERKRREKL SQRFIELSAV IPGLKKRDKA 180 SVLEEAAKYV KQLEARVKTI EDQTAKRTVE SVVLVRKSKL SADADGSSSS GCPAEKPLPD 240 IEAMLSEKTV LIRIHCKNHR GVLARLVSEI ENVHLTVTNA SVMPFPRSSI HITMTAKVEE 300 EFSMALGELV RKLNSALS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 157 | ERKRRE |
2 | 153 | 158 | RKRREK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943830.2 | 0.0 | transcription factor bHLH18-like | ||||
Swissprot | Q9T072 | 4e-47 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A2H3ZN28 | 1e-141 | A0A2H3ZN28_PHODC; transcription factor bHLH18-like | ||||
STRING | XP_008787834.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4213 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-46 | bHLH family protein |