 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PDK_30s832221g001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
LBD |
| Protein Properties |
Length: 179aa MW: 19143 Da PI: 7.7733 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s832221g001 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 81.9 | 1e-25 | 4 | 88 | 1 | 80 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80
+C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+++v
PDK_30s832221g001 4 SCNGCRVLRKGCNDSCTIRPCLqwiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSAAVE 88
6*******************************************************************************99875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 179 aa
Download sequence Send
to blast |
MRMSCNGCRV LRKGCNDSCT IRPCLQWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH 60
LRPAIFRSLL YEACGRIVNP IYGSAAVENV LRGEPIVQIS SDSAAAVPPT KAHDIRHVAK 120
KADAAAELHK AEPHESGAEA EVVGLDLTLG LRPAEERRVE VASPGADACR VELGLGLFS
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KR076541 | 2e-64 | KR076541.1 Boehmeria nivea lateral organ boundaries domain protein (LBD15) mRNA, complete cds. |
