PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s829431g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family LBD
Protein Properties Length: 202aa    MW: 21951 Da    PI: 6.132
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s829431g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.61.9e-42411401100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+C+++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a
  PDK_30s829431g001  41 PCAACKILRRRCVDKCVLAPYFPPTEPLKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQA 132
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la++++ 
  PDK_30s829431g001 133 QLARAQAD 140
                        ***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.98340141IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-4341138IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEPSDTTTTF LHHHFSSSPS SSPTSSPPSF PPTSPPVVLS PCAACKILRR RCVDKCVLAP  60
YFPPTEPLKF TTAHRVFGAS NIIKFLQELP ESQRADAVSS MVYEANARIR DPVYGCAGAI  120
CQLQKQVSEL QAQLARAQAD LVTMQAQHAH LIALVCMEMA QSQQQCIPSQ PVDGLAAGPV  180
VDAFYLDADS SHGSIWEEPL WT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-42321603120LOB family transfactor Ramosa2.1
5ly0_B2e-42321603120LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789049.11e-148LOB domain-containing protein 1-like
SwissprotQ9LQR04e-71LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2H3XUP61e-147A0A2H3XUP6_PHODC; LOB domain-containing protein 1-like
STRINGXP_008789049.11e-147(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-61LOB domain-containing protein 1