PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s827481g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | CPP | ||||||||
Protein Properties | Length: 865aa MW: 94590 Da PI: 6.2379 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 33.5 | 8.6e-11 | 500 | 524 | 16 | 40 |
TCR 16 kYCeCfaagkkCseeCkCedCkNke 40 YCeCfaag++Cse C+C++C+Nk PDK_30s827481g001 500 SYCECFAAGVYCSEPCSCQGCFNKP 524 7**********************96 PP | |||||||
2 | TCR | 30.7 | 6.3e-10 | 571 | 592 | 1 | 22 |
TCR 1 kekkgCnCkkskClkkYCeCfa 22 ++k+gCnCkks+ClkkYCeC++ PDK_30s827481g001 571 RHKRGCNCKKSNCLKKYCECYQ 592 589******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 23.98 | 485 | 615 | IPR005172 | CRC domain |
SMART | SM01114 | 3.3E-6 | 490 | 526 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.8E-7 | 500 | 523 | IPR005172 | CRC domain |
SMART | SM01114 | 3.3E-4 | 571 | 604 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.1E-6 | 573 | 592 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 865 aa Download sequence Send to blast |
MDTPERSKIA GTPLSKFEIT YPYQLVEDKD SPVFNFINSL SPIQPVKSLD SVHSAQSYLP 60 SISSIFSSPH ANLQRESKLL IRNSFPDFSK YESSSDNVDE SNLSTGALNA VRLSRCTVIA 120 RENCSIICSL NEATIDPPDE CSTLPSNLSQ PEQYYPGSPN HNTAPCFGIK MDVKLDIGHA 180 PLELVRFVQN GMDKRKSFYA SETEFLGNHP PEHNRDEVVG CDWENLISDN GDSLSIFDSN 240 NESEACKGPI EKLGDSSKLA EDLERSQKTQ PEESFGPCVQ TASQDPPVNC SEENGKEDET 300 DHTPQILSDT CQTQVALSDQ IEKTANGNGD HIQSGHKVDF QQQRGMRRRC LVFDTAGFSK 360 KNLQDNSNFH SSTSLLSNEK MASDDKCSRP GTSHSPCVLP GIGLHLNTLA TTSKDRLVTQ 420 ETLASGKQLK SMPCSVGPFA PTTSGQKSKS LAVEKDMSPT GNEVQNLQIV HDDASQVPAL 480 GNGEELNQGS PKKKRILLGS YCECFAAGVY CSEPCSCQGC FNKPIHEEMV LATRKQIESR 540 NPLAFAPKVI RTSETGQEIG EDANKTPASA RHKRGCNCKK SNCLKKYCEC YQVLPLGSLN 600 MLSLLVVLDA LSAADVRDAR MPLEGKRGSD NSFVRTCHFR LCLQHSENNG GGFTGILSQL 660 LTYMGLHGVY NEIHESAKWN KGEAQGIVPI GAEEMEQGRE ETNPCEREKD KPDDDGQQHA 720 NVQIEDNHSS ENVLSVTPLQ TRRPCVKLPL FSSAKPPRSS TLSVGFSPWL FTSQPIRKSE 780 IPLPQHKLEK HVSTVLEDDT PDILRCDASP SNGVKTASPN RKRVSPPHNG IGLSPSRKGG 840 KKLILKSIPS FPSLAGCEVA RLGGM |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008789994.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A2H3XX47 | 0.0 | A0A2H3XX47_PHODC; protein tesmin/TSO1-like CXC 2 | ||||
STRING | XP_008789994.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 2e-64 | Tesmin/TSO1-like CXC domain-containing protein |