PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s817631g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 1173aa MW: 131291 Da PI: 6.4224

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s817631g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	1054	1078	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kC C +sF+++ +L H r++ PDK_30s817631g002 1054 FKCDveGCQMSFRTRGELSLHKRNC 1078 89*********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	7.2	1054	1076	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.97	1077	1106	IPR007087	Zinc finger, C2H2
SMART	SM00355	30	1077	1101	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	1079	1101	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.8E-13	1088	1144	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-6	1096	1127	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.009	1107	1136	IPR007087	Zinc finger, C2H2
SMART	SM00355	7.9E-4	1107	1131	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	1109	1131	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.3E-9	1128	1149	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045814	Biological Process	negative regulation of gene expression, epigenetic
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:0003676	Molecular Function	nucleic acid binding
GO:0032452	Molecular Function	histone demethylase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1173 aa Download sequence Send to blast
MAKVCKCRKY SYNSHMYGLF GTCEKTMMYR VPRELLPGVR SSRLRDRKKE DREILVKKAF 60 LDDMMNENRL LCDLLAKIST PYVVLWEPEL LPLPCTGHQS YSSSMFRQAH GLVDDDDCRK 120 AQSQLKGKSS FDCKEDDRCV VDADRAEADV NSISYQNVSC ETQKNTCHPD CMSSRGGVMD 180 STDVDEDDLP FGLHVDSGSL ACVACGILGY PFMAILQPSE KALKELFSLN CEESDLKLEK 240 SESLGQPPHL PSTIKNFYSD LEKNDIKPEE RRKSDLICNL SPEESGHATD APSAIKEPSS 300 YPTKVPEVTC ESIVQPRADN RSGTSILPNN SANDMEYLHM FSSMEVGEQN PQSENTVCAP 360 RKDPECQHSN RLRSFDEENE YDGTVHTTAN AIFQNDLCSS KFSSAKPLNK TDRLLGTTVA 420 RCCHENTKWN TSSEFLRSRI FCLQHALEIE ELLRSKGGAH VLIICHSDYL KVKALAISIA 480 EEIGIQFNCK DVPLENASPP DLDLINTSID DEEHEEDGKD WTSKLGVNLK YCIKLRKQQP 540 TNQEQLANQE RLALSLGGIF SNPSPVSPIS NLKWLCRKSR TQYKVIGTFQ SKSHTDANTE 600 ESKPVTESPN VNPANEIQVY KSRKNGRNDM ASKHRACSRK GAPKELDAYN DVAMVNRDDH 660 RNTSGHTHQT GRMVDDSTDN LLTVPILIAE YPRMHRDGWA TKKISTEHII FASTKSRNLS 720 IPIEMVGQQR KLAQNILFLP LQNLLETSHP YFNVPMLECS ELEQDGVEGS MSRCKVGGLE 780 KSRFEVNIVM LEGECSEVQK EERAVDGTHS EHEIHGTVKP VCEPTLRTVD RSEDLPEVMA 840 NLSNSEGSLG MFSLSEEQLT VPLLSSNSSE MHLNIPALNK SELKNVGANS AEGNIEMQEE 900 LPAAREGILQ GVVVGGNENQ FTADNTAVKS SQIQQAAHLA NDTKANCDVI DYLKSEYHSV 960 NTKPVIDDSK TSVNTGSVSV ADGLGMQEVI ENTRDMSLNA GSDNSPQNVE RHNKTPTRVV 1020 LIHIMEKKVT PMKANKRPEK SVVQKGKDKG KEAFKCDVEG CQMSFRTRGE LSLHKRNCCT 1080 YEGCGKRFHS HKYAMRHQCV HDDERPLKCP WKGCNMSFKW AWARTEHIRV HTGERPYKCK 1140 VSGCGQTFRI EGLVLAAKGF FQAWKDKSFL TFG

Sequence ? help Back to Top

Protein Sequence Length: 1173 aa Download sequence Send to blast

MAKVCKCRKY SYNSHMYGLF GTCEKTMMYR VPRELLPGVR SSRLRDRKKE DREILVKKAF  60
LDDMMNENRL LCDLLAKIST PYVVLWEPEL LPLPCTGHQS YSSSMFRQAH GLVDDDDCRK  120
AQSQLKGKSS FDCKEDDRCV VDADRAEADV NSISYQNVSC ETQKNTCHPD CMSSRGGVMD  180
STDVDEDDLP FGLHVDSGSL ACVACGILGY PFMAILQPSE KALKELFSLN CEESDLKLEK  240
SESLGQPPHL PSTIKNFYSD LEKNDIKPEE RRKSDLICNL SPEESGHATD APSAIKEPSS  300
YPTKVPEVTC ESIVQPRADN RSGTSILPNN SANDMEYLHM FSSMEVGEQN PQSENTVCAP  360
RKDPECQHSN RLRSFDEENE YDGTVHTTAN AIFQNDLCSS KFSSAKPLNK TDRLLGTTVA  420
RCCHENTKWN TSSEFLRSRI FCLQHALEIE ELLRSKGGAH VLIICHSDYL KVKALAISIA  480
EEIGIQFNCK DVPLENASPP DLDLINTSID DEEHEEDGKD WTSKLGVNLK YCIKLRKQQP  540
TNQEQLANQE RLALSLGGIF SNPSPVSPIS NLKWLCRKSR TQYKVIGTFQ SKSHTDANTE  600
ESKPVTESPN VNPANEIQVY KSRKNGRNDM ASKHRACSRK GAPKELDAYN DVAMVNRDDH  660
RNTSGHTHQT GRMVDDSTDN LLTVPILIAE YPRMHRDGWA TKKISTEHII FASTKSRNLS  720
IPIEMVGQQR KLAQNILFLP LQNLLETSHP YFNVPMLECS ELEQDGVEGS MSRCKVGGLE  780
KSRFEVNIVM LEGECSEVQK EERAVDGTHS EHEIHGTVKP VCEPTLRTVD RSEDLPEVMA  840
NLSNSEGSLG MFSLSEEQLT VPLLSSNSSE MHLNIPALNK SELKNVGANS AEGNIEMQEE  900
LPAAREGILQ GVVVGGNENQ FTADNTAVKS SQIQQAAHLA NDTKANCDVI DYLKSEYHSV  960
NTKPVIDDSK TSVNTGSVSV ADGLGMQEVI ENTRDMSLNA GSDNSPQNVE RHNKTPTRVV  1020
LIHIMEKKVT PMKANKRPEK SVVQKGKDKG KEAFKCDVEG CQMSFRTRGE LSLHKRNCCT  1080
YEGCGKRFHS HKYAMRHQCV HDDERPLKCP WKGCNMSFKW AWARTEHIRV HTGERPYKCK  1140
VSGCGQTFRI EGLVLAAKGF FQAWKDKSFL TFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6a57_A	2e-41	1053	1150	22	119	Lysine-specific demethylase REF6
6a58_A	2e-41	1053	1150	22	119	Lysine-specific demethylase REF6
6a59_A	2e-41	1053	1150	22	119	Lysine-specific demethylase REF6
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008775348.1	0.0	lysine-specific demethylase SE14
TrEMBL	A0A2H3WXV7	0.0	A0A2H3WXV7_PHODC; lysine-specific demethylase SE14
STRING	XP_008775348.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9939	34	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	4e-41	C2H2 family protein