PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s817471g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 22700.8 Da PI: 8.5966 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.6 | 1.6e-41 | 41 | 140 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+Ca++C+++pyfp ++p+kfa vhk+FGasnv+k+l ++pe +r da++slvyeA++r+ dPvyG++g +++lqqq++ l+a PDK_30s817471g001 41 PCAACKLLRRRCAQECPFSPYFPPHEPQKFASVHKVFGASNVSKMLMEVPEAQRADAANSLVYEANMRLGDPVYGCMGAVSALQQQVQALEA 132 7******************************************************************************************* PP DUF260 93 elallkee 100 el ++++e PDK_30s817471g001 133 ELRMVRAE 140 **999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.917 | 40 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.3E-42 | 41 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSTERERFDE VGKKIKRETD DTTDRMGRRL GPVGTLNTIT PCAACKLLRR RCAQECPFSP 60 YFPPHEPQKF ASVHKVFGAS NVSKMLMEVP EAQRADAANS LVYEANMRLG DPVYGCMGAV 120 SALQQQVQAL EAELRMVRAE ILKHKCRQAS VHVLPTSHAA LLAASGDVSV AAPPRPASSA 180 SSSSIYTTPP STSSTDYSSI NPNGNVAFFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-44 | 41 | 146 | 11 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-44 | 41 | 146 | 11 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008810564.1 | 1e-156 | LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 1e-77 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A2H3ZAG5 | 1e-154 | A0A2H3ZAG5_PHODC; LOB domain-containing protein 15-like | ||||
STRING | XP_008810564.1 | 1e-155 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-72 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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